| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0004 |
|---|
| Symbol | gyrB |
|---|
| ID | 6407645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4590 |
|---|
| End bp | 7031 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642709911 |
|---|
| Product | DNA gyrase subunit B |
|---|
| Protein accession | YP_001989042 |
|---|
| Protein GI | 192288437 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC CTGCCCGGCA GCCCTCTGCC GAATCCGTGC ATCCCGCGCC GGCCGAATAT
GGCGCGGAAT CGATCCGGGT GCTGAAGGGC CTCGATGCCG TTCGCAAGCG GCCGGGCATG
TATATCGGCG ACACCGACGA CGGCTCCGGC CTGCACCACA TGGTGTACGA AGTCGTCGAC
AACGCGATCG ACGAAGCGCT GGCCGGCCAT GCCAGCCGCG TCGAGGTGAT TCTCAACGCC
GACGGCTCGG TGACGGTGCG CGACGACGGC CGCGGCATTC CGGTCGACAT TCACAAGGGC
GAAGGCGTGT CGGCAGCCGA GGTCATCATG ACCCAGCTAC ACGCCGGCGG AAAATTCGAC
CAGAACTCGT ACAAGGTGTC GGGCGGCCTG CACGGCGTCG GCGTCTCGGT GGTCAACGCG
CTGTCGAGCA AGCTGTTGCT GCGGGTGTGG CGCAACGACA AGGAGCACTA CATCGAATTC
GCCCATGGCG ACGCGGTTGC ACCGCTGAAA GTCGTCGGCG ACGCCAATGG CAAACGCGGC
ACCGAGGTGA CGTTCTACGC ATCGGCCGAA ACGTTCACGC ACATCGAATA TGACTTCGCT
ACGCTGGAGC ACCGGCTGCG CGAACTCGCC TTCCTCAATT CAGGCGTCTA CATCGTGCTG
TCCGACATGC GCCACGCGGT CGAGAAGCGC GAAGAGATGC GCTACGAGGG CGGCGTCACA
GAATTCGTCA AGTATCTCGA TCGCAACAAG AAGCCGATCG TGCCGACCCC GGTGGTGATC
GGCGCCGAAC TGAACGGCAT CATGGTCGAA GCCGCGCTGT GGTGGAACGA CACGTATCAT
GAGAACGTGC TGTGCTTCAC CAACAACATC CCACAACGCG ACGGCGGCAC CCATCTGGCC
GGCTTCCGCG CCGCGCTGAC GCGGCAGATC ACCGGCTATG CCGAGGCCGG CTCCAAGAAG
GAAAAGGTGG CGCTGACCGG CGACGACTGC CGCGAAGGCC TCACCGCCGT GCTGTCGGTG
AAGGTGCCCG ACCCGAAATT CTCGTCGCAG ACCAAGGACA AGCTGGTGTC CTCGGAAGTG
CGTCCGGTGG TCGAAAACGT CATCAACGAA GCCCTCGCTG CCTGGCTGGA AGAACATCCG
TCCGAGGCCA AGATCGTGAT CGGCAAGGTG GTCGAAGCTG CGGCTGCCCG CGAAGCTGCC
CGCAAGGCGC GCGAGCTGAC ACGGCGCAAG GGCGCGCTCG ACATCGCCTC ACTGCCCGGC
AAGCTCGCCG ACTGCCAGGA GCGCGATCCG GCCAAATCCG AACTGTTCAT CGTCGAGGGA
GACTCGGCAG GCGGCTCCGC CAAACAGGGC CGCAACCGCG AGTTCCAGGC TGTGCTCCCG
CTGCGCGGCA AGATCCTCAA CGTCGAGCGC GCGCGCTTCG ACAAGATGCT GAGCTCCGAG
CAGATCGGCA CGCTGATCAC CGCGCTCGGT ACAGGCATCG GCCGCGAAGA CTTCGATCTA
TCGAAGCTTC GCTACCACAA GATCATCCTG ATGACCGACG CCGACGTCGA CGGCGCGCAC
ATCCGCACGC TGCTGCTGAC GTTCTTCTTC CGGCAGATGC CGGCGCTGAT CGAAGGCGGC
TATCTCTACA TCGCGCAGCC GCCGCTCTAC AAAGTGACGC GCGGCAAGTC CGAGCAGTAT
CTGAAGGACG AACGCGCGCT CGAAGACTAT CTGATCGCAA CCGGGCTCGA CGACTGCGCC
TTCAAGCTCG CCAACGGCGA GGTGCGCGGC GGACGCGACC TGCTGGCGCT GGTCGAGGAT
GCGCGCGCGA TCCGCTCGAC GCTGCACAAT CTGCACAGCC GCTACAATCG TTCCGTGGTC
GAACAAGCGG CGATCGCCGG CGTGCTCAGT CCGCGCATCA CCACCGACAT CGCGACCGCC
AACGAGGCCG CCGCCTATAT CGCGCGCCGG CTCGACGCGC TGGCCGATGA AGTCGAGCGT
GGCTGGGTCG GACACTTCAC CGAAGGTGAA GGCTTCAGAT TCGAGCGCAC CGTGCGCGGC
GTCAAGGAGG TCGCAGCGAT CGACGACGCG CTGCTCGGCT CGGCGGACGC CCGCAAGCTC
GATGAGTACG CGGCCGTCCT CCAGGAAGTG TATCCGCGTC CCGGCGTGCT GCGACGGAAG
GAAGCCGAAA CCGCGATCCA CGGCCCGATC AGCCTGTTCG AGGCGGTGAC CGACGCCGGC
CGCAAGGGTG TGGCGCTGCA GCGCTATAAA GGCCTCGGCG AGATGAATCC GAGCCAGCTC
TGGGAGACGA CCCTCGACAC CAACGCCCGC TCGCTGCTGC AGGTAAAGGT GCGCGAGGTG
GATGAGGCCG ACGACATCTT CACCAAGCTG ATGGGCGACG TCGTCGAACC GCGCCGTGAG
TTCATCCAGG AGAACTCGCT GCACGCGACC GTGGACGTGT AG
|
|---|
| Protein sequence | MTEPARQPSA ESVHPAPAEY GAESIRVLKG LDAVRKRPGM YIGDTDDGSG LHHMVYEVVD
NAIDEALAGH ASRVEVILNA DGSVTVRDDG RGIPVDIHKG EGVSAAEVIM TQLHAGGKFD
QNSYKVSGGL HGVGVSVVNA LSSKLLLRVW RNDKEHYIEF AHGDAVAPLK VVGDANGKRG
TEVTFYASAE TFTHIEYDFA TLEHRLRELA FLNSGVYIVL SDMRHAVEKR EEMRYEGGVT
EFVKYLDRNK KPIVPTPVVI GAELNGIMVE AALWWNDTYH ENVLCFTNNI PQRDGGTHLA
GFRAALTRQI TGYAEAGSKK EKVALTGDDC REGLTAVLSV KVPDPKFSSQ TKDKLVSSEV
RPVVENVINE ALAAWLEEHP SEAKIVIGKV VEAAAAREAA RKARELTRRK GALDIASLPG
KLADCQERDP AKSELFIVEG DSAGGSAKQG RNREFQAVLP LRGKILNVER ARFDKMLSSE
QIGTLITALG TGIGREDFDL SKLRYHKIIL MTDADVDGAH IRTLLLTFFF RQMPALIEGG
YLYIAQPPLY KVTRGKSEQY LKDERALEDY LIATGLDDCA FKLANGEVRG GRDLLALVED
ARAIRSTLHN LHSRYNRSVV EQAAIAGVLS PRITTDIATA NEAAAYIARR LDALADEVER
GWVGHFTEGE GFRFERTVRG VKEVAAIDDA LLGSADARKL DEYAAVLQEV YPRPGVLRRK
EAETAIHGPI SLFEAVTDAG RKGVALQRYK GLGEMNPSQL WETTLDTNAR SLLQVKVREV
DEADDIFTKL MGDVVEPRRE FIQENSLHAT VDV
|
|---|
| |