Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_2135 |
Symbol | |
ID | 6375829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 2311622 |
End bp | 2312305 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642684625 |
Product | surface antigen msp4 family protein |
Protein accession | YP_001960524 |
Protein GI | 189501054 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.704163 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0230075 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGG CACTTTCCCT ACTGGCCGCA GCCGTCCTTA TTATGGGCTG GTCAATACCT TCCTATGCAG GCAATCCCTA CGCTTCCGGT AACATCGGTA TCGTATGGTT CGATAATCTC AATGGAGTCG AATCAGATTA TGAAAATAGA GATTACTCCA TCGATGCCTC ATTAGACTCA GGCATTTCAC TGACTGGTGC AGTAGGTTGC GATATGGGAG ATACAAGAGT TGAAGCTGAG ATAGGGTATC AGACAAATGA TGCCGTATCA GCCGAAGTTC TTGATGACAA TGGAATTCTT GAAGATGGCC CCTGGGAATG GGGTGGTGAT GTTTCGCTAA CAACGTTCAT GTTCAACGGC TACTACGACA TCGCACTTAT GGAATCCGGC CTTGAGTTCT TCCTTACTGC AGGTGTAGGC GGAGCTTTCT ATTCCTTCGA TGATGTTGGT GACATAAACG ATGATCGTTA CAGGGGTACT ACCAACGGAA GCACCTGGGC ATATCAGCTT GGAGCCGGAC TTGCTCTTCC TGTTGGCGAC AACCTCATCG TTGATGCCCG CTACCGTTAT TTCGATACCG CTGAATTCAC GACAGAGGAC GATTTTGACG CCTTTGATGA TGTAGCGATG AACCTCGATA TCAGCAGCCA TTCTGCTCTT GTCGGTTTGC GTTACAACTT CTGA
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Protein sequence | MKKALSLLAA AVLIMGWSIP SYAGNPYASG NIGIVWFDNL NGVESDYENR DYSIDASLDS GISLTGAVGC DMGDTRVEAE IGYQTNDAVS AEVLDDNGIL EDGPWEWGGD VSLTTFMFNG YYDIALMESG LEFFLTAGVG GAFYSFDDVG DINDDRYRGT TNGSTWAYQL GAGLALPVGD NLIVDARYRY FDTAEFTTED DFDAFDDVAM NLDISSHSAL VGLRYNF
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