| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2095 |
|---|
| Symbol | |
|---|
| ID | 6375789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2265648 |
|---|
| End bp | 2267348 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642684586 |
|---|
| Product | Peptidoglycan-binding domain 1 protein |
|---|
| Protein accession | YP_001960485 |
|---|
| Protein GI | 189501015 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.683622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTTA TGATAGCTCT TCTTGTCGTG CTTCTTGCTT TTGGTCCCGG AAGTACACAG
ACTCCTCCCG TTCAAAAGAG AACAGTAGCC GCGTCTTCTG TTACGGAGGT AAAGCGGAAA
TCCGGAAAAA ACCATGAGAT CAGGGAGAAC ATTCGCTGCC ACATTGAGCA GCTTGAAAAC
GATCAGGCTC TTCGGAAGGG ACGGGAGCGC ATGGCGTTTA ACGCGTATCT CGCAGATTTC
TACAGGTCGA ATGATTTCAG CCCGGTATGG GTGAAGCGAT CCCAGATTTC TGAAATGCTC
GATGCGATCA AATCCGTTGA AGCCGACGGG CTACTGTCTC AGGACTATCA TCTTTCAGCA
ATTCAGGAGT TTTATGAAAA TTCTCCGGAC ACTCCGTTTT TAAAAGCCCG CTATGAACTG
CTCCTGACAG ATGCCATGTT CAAGCTCTCC TATCATCTTC TGCACGGGAA AGTGGATCCC
GAGAAGCTCG ATTCAAACTG GAACCTCTCA GAGGGCGTCA ATGGCGATGG TCTTGCCGGG
ATGCTCCGGA ATGCGCTTGC CGGAGATTCC CTTGCAGCAT TGATTGCACA GCTTCGCCCG
AAACATCCCT CATACAGCAG CCTGAAAGAA GGGCTTGCCA GATACCGCCG TCTTGCAGCA
GACGGGGGAT GGGGCACTGT TCCTGAAGGC CCGACGATCA AGGAGATAGG GCAGTATGAT
GCCAGAATCC CGGCACTGCG CGGTCGTCTG GAAATATCCG GAGAGATTGA ACAGCTCTCA
AAGGTAGATA CTTCATATGC AGATGAAGCA ATGCGATACA GTGTCGGGTT GCAGGAAGCT
GTCAAAAAAT TTCAGAATCG TCATGGTCTT CAGGAAGACG GGGAGGTCGG GCCGAAAACA
CTGCGGGCAC TCAATGTTCC TGTTGAAAAG AGGGTGGAGC AGATCCGTAT CAATCTTGAA
CGTTACCGAT GGTTTGTTCA GAAACTCGAG CCTACCTACC TCCTGGTCAA TATTGCGGGT
TTCAACATTA CCTATTTTGA GCAAGGCGCG TTCAAATGGG GCTCAAGGGT CATTGTCGGT
GAGCCGTTCT GGAAAACTCC TGTTTTCAAG GCTCAGATGC AGTATGTTAT CTTTAATCCT
TCATGGAACG TTCCGCCGGG AATTCTCCGA AAGGAGGCGC TTCCGGCCAT CCGCAAAGAC
CCCGGCTATC TCTCCCGTCA CGGCCTGCAG GTGGTTGACC GGAACGGAAA CGTGGTGAAC
CCCGGTTCGG TTAACTGGGC TTCCGGGGCG CAATCCTATC GTCTTCGGCA GCCTCCGGGG
AGCAGGAACG CTCTTGGTCG CGTCAAGTTC ATGTTTCCCA ACAAGCATCT GGTGTATCTT
CATGATACAC CGGGCAAGCA TCTTTTCGAT AAAAGTTCGC GCGCATTCAG TCACGGTTGT
ATCAGACTGC AAAACCCTCT TGATTTAGCA GAGTTGCTGC TGGGATGGAG CGGGGAAAAG
GTGCGGCAAA CCGTGAGTGC AGGCAGGACC AGAAGGATTA ACCTGCCAAC GAAGCTCCCT
GTTTTTCTCC TGTATCTCAC TGCTGTAGCT GAAGGGGAGG AAGTACAGTT CAAAAACGAC
GTGTACAGTC GCGATGCTGC GGTTCTGCAG GCGTTGAACA GTCCGTTTCC CTACAAAACG
GTGGAAAGCT GTACCTTCTG A
|
|---|
| Protein sequence | MFVMIALLVV LLAFGPGSTQ TPPVQKRTVA ASSVTEVKRK SGKNHEIREN IRCHIEQLEN
DQALRKGRER MAFNAYLADF YRSNDFSPVW VKRSQISEML DAIKSVEADG LLSQDYHLSA
IQEFYENSPD TPFLKARYEL LLTDAMFKLS YHLLHGKVDP EKLDSNWNLS EGVNGDGLAG
MLRNALAGDS LAALIAQLRP KHPSYSSLKE GLARYRRLAA DGGWGTVPEG PTIKEIGQYD
ARIPALRGRL EISGEIEQLS KVDTSYADEA MRYSVGLQEA VKKFQNRHGL QEDGEVGPKT
LRALNVPVEK RVEQIRINLE RYRWFVQKLE PTYLLVNIAG FNITYFEQGA FKWGSRVIVG
EPFWKTPVFK AQMQYVIFNP SWNVPPGILR KEALPAIRKD PGYLSRHGLQ VVDRNGNVVN
PGSVNWASGA QSYRLRQPPG SRNALGRVKF MFPNKHLVYL HDTPGKHLFD KSSRAFSHGC
IRLQNPLDLA ELLLGWSGEK VRQTVSAGRT RRINLPTKLP VFLLYLTAVA EGEEVQFKND
VYSRDAAVLQ ALNSPFPYKT VESCTF
|
|---|
| |