Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1913 |
Symbol | |
ID | 6375605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | - |
Start bp | 2077681 |
End bp | 2078274 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642684409 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001960310 |
Protein GI | 189500840 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.810629 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.023497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAGTTA TTTCAAAGTC TATCCCTGAT GTTTTGGAAT TTGTTCCGAA AATATATGGT GATGAGCGAG GATATTTTTT TGAATCGTTT CGAAAGGATA TTGTTGAGGA GCATGTCGGT AAGGTAGACT TTGTGCAGGA TAATCAGTCG AAGTCCGGTT ATGGTGTACT AAGAGGGTTG CATTTTCAGA AACCGCCGTT CACCCAGTCG AAGCTGGTTC GTGTTATAGA AGGGTCTGTT CTCGATGTTG CCGTCGATAT TCGTGAAGGT TCTCCTTGGT ACGGGCAGTA TGTTGCAGTG AAGCTTGATT CGCAAACCAA TAATATGCTA TGGGTGCCGC AAGGTTTTGC CCATGGCTTT ATCGTGCTAT CCAAAGAAGC GATCTTTTCA TACAAATGTG ACAACTACTA CGCTCCTGAG TATGATGCAG GTATCAAGTG GAACGATCCT GATATCGGGA TAGACTGGGG TATTGCAGAA GAGCAGGTTC AAGTCTCTGA AAAGGATGCG GGACAGCCCT TTCTCAAAGA CGCGTTCCAT TTCTCCTACA ACGATTTTAA AAAAGAAAAA GTCTATCACA GGAGAGACGG GTGA
|
Protein sequence | MQVISKSIPD VLEFVPKIYG DERGYFFESF RKDIVEEHVG KVDFVQDNQS KSGYGVLRGL HFQKPPFTQS KLVRVIEGSV LDVAVDIREG SPWYGQYVAV KLDSQTNNML WVPQGFAHGF IVLSKEAIFS YKCDNYYAPE YDAGIKWNDP DIGIDWGIAE EQVQVSEKDA GQPFLKDAFH FSYNDFKKEK VYHRRDG
|
| |