Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1692 |
Symbol | |
ID | 6375379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | - |
Start bp | 1831030 |
End bp | 1832241 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642684186 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_001960092 |
Protein GI | 189500622 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000105564 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGTGGTGA TAAGTCTGAT CCTTATTGTT GTTGCTGAAA TAGTGACAAA ACGGATCTTT CTGAGGATAA TTATTTCAGT AGCATCAAAG ACAAAAACAA TTTATGATGA TCTTCTGGTA AAGCACAAGG TTTTTTCCTG GCTTGCTCAT GTGGTCCCTC CTTTGCTGCT GTATAACCTT GCGGTTCCTG TTCTGCAGTT TTTTCCTCAA AGCATCGTTG TCGTTCAATC GTTGGCAATG CTCTATCTGA CGGTGATTGT CGTGTTTGCT ATTCTCAGTG CCCTCGACGC TATGCTTGAG TATTACAATC AGAGCACGGT CGCGGAGAAG CTGCCGCTGA AAAGCTTTAT TCAGGTTATA AAAACCGTGG TGGTTTCAGT TGGAGCGGTG ATTGTTATTT CCAGGCTGAT CGGAAAGTCT CCAGTGGTTT TTTTCAGCGG GCTCGGTGCG TTTACCGCGG TGATCATTCT CGTGTTCAAG GATTCCATCC TGGGATTTGT CGCAGGAATT CAGCTATCCA CAAACAACCT TGTAAAGGTT GGTGACTGGA TCGAAATGCC GAAATATAAC GTCGATGGTG ACGTTATCGA TATTTCGCTC GTGACGGTTT CTGTGCAGAA CTGGGACAAG ACCATCAGCA CCATTCCGGC CTATGCCCTC ATTTCAGAAG GCTTCAAGAA CTGGAGGGGG ATGAGTGATT CAGGTGGGCG CAGGATCAGA CGATCAGTCA CTATTGATAT GAACAGTGTC TGTTTCTGCG ATGAAGCTAT GGTTGAAAAA TTCAGCAGGG TGCAGCTGCT GCAGGACTAT CTTCAGGAAA AACAGCGTGA AGTTGACGAG TACAATGCTC ATCACAAGGT TGATACTTCT TCCCCGGTCA ACGGCCGCAG GCTGACAAAT CTTGGTACTT TCAGGGCGTA TCTTGTTGCC TATCTTCGCG ACCATCCAAA GATAGACCCC GATATGACCT TTCTTGTCCG TCATTTGCAG CCCTCCGAAA ACGGAATTCC AGTTCAGATA TACGTTTTCA GCAGTGATCA GGTCTGGGCA AATTACGAGG CGATACAGGC AGATATCATG GATCATGTTC TCTCTATTCT GCCCTTTTTT GAACTCAGAA TATTTCAAGC TCCATCAGGG AGGGATATTC AACTGGCCGG AAATTCCCTT CAAACAGCGC TTTCTGCAAG CAGAAAGCCT GATGGCGTGT GA
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Protein sequence | MVVISLILIV VAEIVTKRIF LRIIISVASK TKTIYDDLLV KHKVFSWLAH VVPPLLLYNL AVPVLQFFPQ SIVVVQSLAM LYLTVIVVFA ILSALDAMLE YYNQSTVAEK LPLKSFIQVI KTVVVSVGAV IVISRLIGKS PVVFFSGLGA FTAVIILVFK DSILGFVAGI QLSTNNLVKV GDWIEMPKYN VDGDVIDISL VTVSVQNWDK TISTIPAYAL ISEGFKNWRG MSDSGGRRIR RSVTIDMNSV CFCDEAMVEK FSRVQLLQDY LQEKQREVDE YNAHHKVDTS SPVNGRRLTN LGTFRAYLVA YLRDHPKIDP DMTFLVRHLQ PSENGIPVQI YVFSSDQVWA NYEAIQADIM DHVLSILPFF ELRIFQAPSG RDIQLAGNSL QTALSASRKP DGV
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