| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1688 |
|---|
| Symbol | |
|---|
| ID | 6375375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 1828598 |
|---|
| End bp | 1829161 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642684182 |
|---|
| Product | protein of unknown function DUF179 |
|---|
| Protein accession | YP_001960088 |
|---|
| Protein GI | 189500618 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1678] Putative transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000694892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAATG AATTTGAGCA ACTTTCGATA GGTGAACTTT TAATGGCATC AGCTGTCATG
CTCGAGCCTG ATTTCAAGCG GACAGTGCTG CTGATGTGTG AACATAATGA TGAGGGTTCA
CTCGGATTTA TCCTGAATCG CCCTATGGAG ATCAAGGTCA GTGAAGCGAT ATCCGGTTTT
GATGATCTCG ATGTTCCGTT GCATATGGGA GGCCCTGTGC AGGTTGATAC GGTGCATTAT
CTGCATCGAA GGGGGGATGT GATCGATGGT TCATTGGAGG TGCTGCCAGG TGTCTTTTGG
GGGGGAGAGC AGGAACAGCT CAGTTTTCTC ATGAGTTCCG GTGTGGTTTC GCCGGGGGAA
GTGCGTTTTT TCCTTGGATA CGCAGGGTGG AGCTCCGGTC AGCTCGAGAA GGAGTTTGAA
GAAGGTTCAT GGTACAGGAC TTTGGCTGCA GATGAAATTA TTTTCAGTGA TGAGTATGAG
CGGATGTGGG CAAGGACTGT TCGGTCAAAA GGAGGAGAGT ATCACTTTGC AGCGAATTCT
CCCGAGCTTC CCGGAATGAA CTGA
|
|---|
| Protein sequence | MVNEFEQLSI GELLMASAVM LEPDFKRTVL LMCEHNDEGS LGFILNRPME IKVSEAISGF
DDLDVPLHMG GPVQVDTVHY LHRRGDVIDG SLEVLPGVFW GGEQEQLSFL MSSGVVSPGE
VRFFLGYAGW SSGQLEKEFE EGSWYRTLAA DEIIFSDEYE RMWARTVRSK GGEYHFAANS
PELPGMN
|
|---|
| |