Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1293 |
Symbol | |
ID | 6374970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 1405506 |
End bp | 1406015 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642683790 |
Product | 16S rRNA processing protein RimM |
Protein accession | YP_001959705 |
Protein GI | 189500235 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000894981 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.803159 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGAGG AATTCTATCT GGCTGGAAAA ATTCTTAAGC CGAAAGGTTT AAGGGGTGAG GTGAAAATCC AGCCGGTTAC GGATTTTCCT GACAGTTATC TTGAGAGAAA GATTTTCTAT GTCGGAAAAT CGGAAGAGGA GGCGGTTCGT CGCACAGTCC GTCAGGCAGC GTTGCGAAAA GGTTTTGCCT ATCTTCTTTT TTCAGGTATC GATACCAGGG AGAAAGCTGA AGAAATCGTA GGATTCAGTG TTTTTGTTCG TTCTGACGCA TTGATCCAGC TGCCTCCCGA CAGGGCTTAC CTGCATGAAC TGAGAGGCTT GAAAGTGCTC AATGAGCGCC ATGAAGAGCT TGGCATTATA GAGGATGTTC TGGGTATGCC TGCACATGAT GTCTATGAAA TACGCGCTGA AGGGGGTCTC GTCTATGTGC CGGCGGTTGA AGAGTTTGTT GAGGAGATTT CTATCGATGA AGGGTATATG GTGCTGAAGC GGTTTGAAGA GTTTCTCTGA
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Protein sequence | MKEEFYLAGK ILKPKGLRGE VKIQPVTDFP DSYLERKIFY VGKSEEEAVR RTVRQAALRK GFAYLLFSGI DTREKAEEIV GFSVFVRSDA LIQLPPDRAY LHELRGLKVL NERHEELGII EDVLGMPAHD VYEIRAEGGL VYVPAVEEFV EEISIDEGYM VLKRFEEFL
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