Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1068 |
Symbol | |
ID | 6374742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 1155756 |
End bp | 1158914 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642683570 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_001959488 |
Protein GI | 189500018 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.923485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00533335 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGAAC GATTTATCAA CAGACCGGTT CTCGCTACGG TTATATCGGT ATTCATTTTT CTGCTTGGTT TGATCGGTAT TACACAGCTT CCTCTCACAC AGTTTCCCGA TATAGCGCCG CCCGCCGTAC AAGTATCGGC TACGTATCCC GGAGCCGATG CTCAAACTAT CGCCCGTTCG GTAGCTCCTT CGCTCGAAGA GGCGATCAAT GGTGTCGATG ATATGACCTA TATGACATCG ACATCGAGCA ATGACGGTTC CCTGGTGATC AACGTGCTTT TCAGGACGGG CACCGATCCA GACCAGGCGG CGGTTAATGT ACAGAACCGG GTCGCAATGG CAACCAGTCA GTTGCCTGAA GAGGTGACGA GGTTCGGGTT GGCGACCGCC AAGACGCAGA ACAGCATGAT CATGGTGATT ACGCTCTTCA GCGACGATCC TGAAACCTAT GACGCTACGT TCCTGCAGAA TTATGCGAAG ATCAACCTGC TTCCAGATAT GCAGCGTGTC AACGGCGTCG GCCAGACCAT GGTGTTCGGG GCAAGAGACT ACTCGATGCG TATCTGGCTG AAGCCTGACA GAATGGCGGC TTATTCGGTG ACACCCCAGG AAGTGATTGC GGCGGTTCAG AGCCAGAATG TGGAGGCTGC ACCGGGGAAG TTCGGTGAGG GTGCCGGTGA GGCCCTCGAA CTGATCATCC GTTACAAGGG AAAAATGAAG GAGCCGTGTG AATACGGCAA CATTATTCTG CGTACCAATG AGGACGGTTC GGTGCTGCGG CTCAGGGACG TGGCAAGGGT CGAACTGGGT TCCTTCAGTT ATGCGGTTGA TGCGGACGCC AACGGCAAGG AGTCGGTAAC CATGGCGATT TTTCAGGCTG CCGGTTCCAA CTCCAATGAT ATCCAGATTG CCGTCCAGGA TGTGCTCGAG AAAGCGTCGG AATCGTTCCC GGCAGGGATC GACTACATCA TTCCCTACAG TACCAAGAAG TCGCTCGACG AGTCGATTGA ACAGGTCATT TTCACCCTGC TGCAGGTTTT CGCACTGGTT TTTCTCGTGG TGTTCATTTT CCTGCAGGAT TTCCGCTCCA CGCTTATTCC GGCCATTGCC GTCCCTGTAG CCATTGTCGG GACCTTTTTC TTCCTGACTC TTTTCGGTTT TTCCATTAAC CTGCTGACTC TCTTTGCGCT TGTTCTCGCA ATCGGCATTG TAGTTGATGA TGCCATCGTT ATTGTCGAAG CTGTTCATGC AAGGATGGAG CAGCGGCAGC TTCCGGCAAG GGTCGCCACG CATCAGGTTA TGCGGGAGAT AACCGGCGTG GTTATCTCCA CTACGCTTGT TATAGCTTCG GTCTTTCTTC CCGTTGGCTT TCTCGGTGGT TCGATCGGGA TTTTTTATCG TCAGTTTGCC TTTACGCTGG TAACAGCAGT TCTGATATCG ACCGTCAATG CACTGACGCT CAGTCCGGCA CTTTGTGCGC TTTTTCTTAC GAAGGGCGGT GAAGGAGAGG AAAACCTTGG CTGGTTCAAA CGTTTGGAGC AGCGTCTTTT CAGAGGATTC AATGCCGGTT TTTCAGTGGT GACCGAACGC TATGTCGGCA CTCTCAAGGT ACTCATCCGC AAAAAATGGC TAAGCCTTGG CGGGCTGGCT GCGGTTTCCG GGCTTGCATT CTGGATGGCG GCCTCCGCGC CAACCGGCTT TATTCCCGAC GAAGACAGCG GTTTTTTCAT TCTCTCCGCA TCGCTTCCTC CAGGGGCATC GCTCGACAGG ACAATGGAAA CCCTTGACAA GGTCGAGGCC ATTCTGCAGG CAGAGGAGAG CGTTAACGAC GTCATTTCGG TTGCAGGCTT CGACCTGTTA TCAGGAGCAA GTTCTCCTTC CGCTGCTGTT GTTTTTGCCA GCCTCAAGGA TCCGGAAGAG CGCGGCAGGG TGAAAAATAT CGGCGCCATC ATGGGCGGGG TATCGCAAAA ACTTGCATCA ATCAGCGAAG GAACATTTTT CCCCTTCCAG CCACCTACCG TTCCAGGGTT CGGTAATGTG GGGGGGCTCG AGATGGTTTT ACAGGACAGG ACATCCGGCA GCCTGGAAAA GTTTGGGGAG ACGGCCAACG GTTTTATCGG AGCGCTCATG GCCCGCCCGG AAATCGCCTT TGCCTTTACC ACGTTCAATA CCGGCTATCC GCAACACGAG CTCGTGGTGG ACGACGTGAA AGCCAGCCAG CTCGGCGTTC GTGTCGATGA AGTGCTCATG GTCATGCAGG CCTATTACGG CAGTCTCCAG GTATCGGATT TCAACCGGTT CGGCAAATAC TACAGGGTTA TTGTTCAAGC GGAAGCCGAA GACCGCAGGG ATCCCTCTTC GCTCGATGGA GTGTTCGTTA AAAATGCAAT GGGGGAGATG GTCCCTATGA ATTCGCTGGT AACCCTGAAA AAAGTCTATG GTCCCCAGAC AGTGGATCAT TTCAACCTTT TCAACGCTTT GACCGTCAAC GCCGTTGTTT CTCCGGGATA TACCACCGGC CAGGCAATAG GGGCCGCTGA AGAGGTTGCC GCTACGGCTC TTCCTGCCGG TTTTTCCTAT GACTGGAAAG GGATGAGCCG TGAAGAGATC GAGTCAGGCA GCCAGGCGGT TTATATATTT CTGCTTTCCC TTGTGTTTGT TTACCTCCTG CTTTCTGCGC AGTACGAAAG TTACATCCTG CCGCTTGCGG TTATTTTTAC GATCCCGACC GGTATTCTGG GTGTTTTTGT CGGGATACAG CTCTTCGGCG TTGAAAACAA TATCTATGTG CAGGTTGCGA TGATTATGCT GATTGGTCTG CTTGCAAAAA ACGCTATTCT GATCGTGGAA TTCGCTATTC AACGCCGGAA ATCCGGGTAT TCGCTTTTTG AATCGGCACT CGAGGGTTCG AGGGTGAGGC TTCGGCCTAT TCTCATGACC TCGTTTACCT TTGCTCTCGG CCTTCTGCCG CTTCTCTGGG TGTCCGGGCC ATCCGCCCTC GGCAATCATT CTATCGGCGC TGCGGCGGTG GGAGGGATGC TCAGCGGGAC GTTTCTTGGC GTGCTGATTA TTCCGGTGCT GTATATGGTA TTCCAGTCGC TTCAGGAGAA GATAAGCGGA CCTCCGCAGG AGCCCGAGAG TGATGGTGCA GTCAAATAA
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Protein sequence | MFERFINRPV LATVISVFIF LLGLIGITQL PLTQFPDIAP PAVQVSATYP GADAQTIARS VAPSLEEAIN GVDDMTYMTS TSSNDGSLVI NVLFRTGTDP DQAAVNVQNR VAMATSQLPE EVTRFGLATA KTQNSMIMVI TLFSDDPETY DATFLQNYAK INLLPDMQRV NGVGQTMVFG ARDYSMRIWL KPDRMAAYSV TPQEVIAAVQ SQNVEAAPGK FGEGAGEALE LIIRYKGKMK EPCEYGNIIL RTNEDGSVLR LRDVARVELG SFSYAVDADA NGKESVTMAI FQAAGSNSND IQIAVQDVLE KASESFPAGI DYIIPYSTKK SLDESIEQVI FTLLQVFALV FLVVFIFLQD FRSTLIPAIA VPVAIVGTFF FLTLFGFSIN LLTLFALVLA IGIVVDDAIV IVEAVHARME QRQLPARVAT HQVMREITGV VISTTLVIAS VFLPVGFLGG SIGIFYRQFA FTLVTAVLIS TVNALTLSPA LCALFLTKGG EGEENLGWFK RLEQRLFRGF NAGFSVVTER YVGTLKVLIR KKWLSLGGLA AVSGLAFWMA ASAPTGFIPD EDSGFFILSA SLPPGASLDR TMETLDKVEA ILQAEESVND VISVAGFDLL SGASSPSAAV VFASLKDPEE RGRVKNIGAI MGGVSQKLAS ISEGTFFPFQ PPTVPGFGNV GGLEMVLQDR TSGSLEKFGE TANGFIGALM ARPEIAFAFT TFNTGYPQHE LVVDDVKASQ LGVRVDEVLM VMQAYYGSLQ VSDFNRFGKY YRVIVQAEAE DRRDPSSLDG VFVKNAMGEM VPMNSLVTLK KVYGPQTVDH FNLFNALTVN AVVSPGYTTG QAIGAAEEVA ATALPAGFSY DWKGMSREEI ESGSQAVYIF LLSLVFVYLL LSAQYESYIL PLAVIFTIPT GILGVFVGIQ LFGVENNIYV QVAMIMLIGL LAKNAILIVE FAIQRRKSGY SLFESALEGS RVRLRPILMT SFTFALGLLP LLWVSGPSAL GNHSIGAAAV GGMLSGTFLG VLIIPVLYMV FQSLQEKISG PPQEPESDGA VK
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