Gene Cphamn1_1068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1068 
Symbol 
ID6374742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1155756 
End bp1158914 
Gene Length3159 bp 
Protein Length1052 aa 
Translation table11 
GC content53% 
IMG OID642683570 
Producttransporter, hydrophobe/amphiphile efflux-1 (HAE1) family 
Protein accessionYP_001959488 
Protein GI189500018 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.923485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00533335 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTTGAAC GATTTATCAA CAGACCGGTT CTCGCTACGG TTATATCGGT ATTCATTTTT 
CTGCTTGGTT TGATCGGTAT TACACAGCTT CCTCTCACAC AGTTTCCCGA TATAGCGCCG
CCCGCCGTAC AAGTATCGGC TACGTATCCC GGAGCCGATG CTCAAACTAT CGCCCGTTCG
GTAGCTCCTT CGCTCGAAGA GGCGATCAAT GGTGTCGATG ATATGACCTA TATGACATCG
ACATCGAGCA ATGACGGTTC CCTGGTGATC AACGTGCTTT TCAGGACGGG CACCGATCCA
GACCAGGCGG CGGTTAATGT ACAGAACCGG GTCGCAATGG CAACCAGTCA GTTGCCTGAA
GAGGTGACGA GGTTCGGGTT GGCGACCGCC AAGACGCAGA ACAGCATGAT CATGGTGATT
ACGCTCTTCA GCGACGATCC TGAAACCTAT GACGCTACGT TCCTGCAGAA TTATGCGAAG
ATCAACCTGC TTCCAGATAT GCAGCGTGTC AACGGCGTCG GCCAGACCAT GGTGTTCGGG
GCAAGAGACT ACTCGATGCG TATCTGGCTG AAGCCTGACA GAATGGCGGC TTATTCGGTG
ACACCCCAGG AAGTGATTGC GGCGGTTCAG AGCCAGAATG TGGAGGCTGC ACCGGGGAAG
TTCGGTGAGG GTGCCGGTGA GGCCCTCGAA CTGATCATCC GTTACAAGGG AAAAATGAAG
GAGCCGTGTG AATACGGCAA CATTATTCTG CGTACCAATG AGGACGGTTC GGTGCTGCGG
CTCAGGGACG TGGCAAGGGT CGAACTGGGT TCCTTCAGTT ATGCGGTTGA TGCGGACGCC
AACGGCAAGG AGTCGGTAAC CATGGCGATT TTTCAGGCTG CCGGTTCCAA CTCCAATGAT
ATCCAGATTG CCGTCCAGGA TGTGCTCGAG AAAGCGTCGG AATCGTTCCC GGCAGGGATC
GACTACATCA TTCCCTACAG TACCAAGAAG TCGCTCGACG AGTCGATTGA ACAGGTCATT
TTCACCCTGC TGCAGGTTTT CGCACTGGTT TTTCTCGTGG TGTTCATTTT CCTGCAGGAT
TTCCGCTCCA CGCTTATTCC GGCCATTGCC GTCCCTGTAG CCATTGTCGG GACCTTTTTC
TTCCTGACTC TTTTCGGTTT TTCCATTAAC CTGCTGACTC TCTTTGCGCT TGTTCTCGCA
ATCGGCATTG TAGTTGATGA TGCCATCGTT ATTGTCGAAG CTGTTCATGC AAGGATGGAG
CAGCGGCAGC TTCCGGCAAG GGTCGCCACG CATCAGGTTA TGCGGGAGAT AACCGGCGTG
GTTATCTCCA CTACGCTTGT TATAGCTTCG GTCTTTCTTC CCGTTGGCTT TCTCGGTGGT
TCGATCGGGA TTTTTTATCG TCAGTTTGCC TTTACGCTGG TAACAGCAGT TCTGATATCG
ACCGTCAATG CACTGACGCT CAGTCCGGCA CTTTGTGCGC TTTTTCTTAC GAAGGGCGGT
GAAGGAGAGG AAAACCTTGG CTGGTTCAAA CGTTTGGAGC AGCGTCTTTT CAGAGGATTC
AATGCCGGTT TTTCAGTGGT GACCGAACGC TATGTCGGCA CTCTCAAGGT ACTCATCCGC
AAAAAATGGC TAAGCCTTGG CGGGCTGGCT GCGGTTTCCG GGCTTGCATT CTGGATGGCG
GCCTCCGCGC CAACCGGCTT TATTCCCGAC GAAGACAGCG GTTTTTTCAT TCTCTCCGCA
TCGCTTCCTC CAGGGGCATC GCTCGACAGG ACAATGGAAA CCCTTGACAA GGTCGAGGCC
ATTCTGCAGG CAGAGGAGAG CGTTAACGAC GTCATTTCGG TTGCAGGCTT CGACCTGTTA
TCAGGAGCAA GTTCTCCTTC CGCTGCTGTT GTTTTTGCCA GCCTCAAGGA TCCGGAAGAG
CGCGGCAGGG TGAAAAATAT CGGCGCCATC ATGGGCGGGG TATCGCAAAA ACTTGCATCA
ATCAGCGAAG GAACATTTTT CCCCTTCCAG CCACCTACCG TTCCAGGGTT CGGTAATGTG
GGGGGGCTCG AGATGGTTTT ACAGGACAGG ACATCCGGCA GCCTGGAAAA GTTTGGGGAG
ACGGCCAACG GTTTTATCGG AGCGCTCATG GCCCGCCCGG AAATCGCCTT TGCCTTTACC
ACGTTCAATA CCGGCTATCC GCAACACGAG CTCGTGGTGG ACGACGTGAA AGCCAGCCAG
CTCGGCGTTC GTGTCGATGA AGTGCTCATG GTCATGCAGG CCTATTACGG CAGTCTCCAG
GTATCGGATT TCAACCGGTT CGGCAAATAC TACAGGGTTA TTGTTCAAGC GGAAGCCGAA
GACCGCAGGG ATCCCTCTTC GCTCGATGGA GTGTTCGTTA AAAATGCAAT GGGGGAGATG
GTCCCTATGA ATTCGCTGGT AACCCTGAAA AAAGTCTATG GTCCCCAGAC AGTGGATCAT
TTCAACCTTT TCAACGCTTT GACCGTCAAC GCCGTTGTTT CTCCGGGATA TACCACCGGC
CAGGCAATAG GGGCCGCTGA AGAGGTTGCC GCTACGGCTC TTCCTGCCGG TTTTTCCTAT
GACTGGAAAG GGATGAGCCG TGAAGAGATC GAGTCAGGCA GCCAGGCGGT TTATATATTT
CTGCTTTCCC TTGTGTTTGT TTACCTCCTG CTTTCTGCGC AGTACGAAAG TTACATCCTG
CCGCTTGCGG TTATTTTTAC GATCCCGACC GGTATTCTGG GTGTTTTTGT CGGGATACAG
CTCTTCGGCG TTGAAAACAA TATCTATGTG CAGGTTGCGA TGATTATGCT GATTGGTCTG
CTTGCAAAAA ACGCTATTCT GATCGTGGAA TTCGCTATTC AACGCCGGAA ATCCGGGTAT
TCGCTTTTTG AATCGGCACT CGAGGGTTCG AGGGTGAGGC TTCGGCCTAT TCTCATGACC
TCGTTTACCT TTGCTCTCGG CCTTCTGCCG CTTCTCTGGG TGTCCGGGCC ATCCGCCCTC
GGCAATCATT CTATCGGCGC TGCGGCGGTG GGAGGGATGC TCAGCGGGAC GTTTCTTGGC
GTGCTGATTA TTCCGGTGCT GTATATGGTA TTCCAGTCGC TTCAGGAGAA GATAAGCGGA
CCTCCGCAGG AGCCCGAGAG TGATGGTGCA GTCAAATAA
 
Protein sequence
MFERFINRPV LATVISVFIF LLGLIGITQL PLTQFPDIAP PAVQVSATYP GADAQTIARS 
VAPSLEEAIN GVDDMTYMTS TSSNDGSLVI NVLFRTGTDP DQAAVNVQNR VAMATSQLPE
EVTRFGLATA KTQNSMIMVI TLFSDDPETY DATFLQNYAK INLLPDMQRV NGVGQTMVFG
ARDYSMRIWL KPDRMAAYSV TPQEVIAAVQ SQNVEAAPGK FGEGAGEALE LIIRYKGKMK
EPCEYGNIIL RTNEDGSVLR LRDVARVELG SFSYAVDADA NGKESVTMAI FQAAGSNSND
IQIAVQDVLE KASESFPAGI DYIIPYSTKK SLDESIEQVI FTLLQVFALV FLVVFIFLQD
FRSTLIPAIA VPVAIVGTFF FLTLFGFSIN LLTLFALVLA IGIVVDDAIV IVEAVHARME
QRQLPARVAT HQVMREITGV VISTTLVIAS VFLPVGFLGG SIGIFYRQFA FTLVTAVLIS
TVNALTLSPA LCALFLTKGG EGEENLGWFK RLEQRLFRGF NAGFSVVTER YVGTLKVLIR
KKWLSLGGLA AVSGLAFWMA ASAPTGFIPD EDSGFFILSA SLPPGASLDR TMETLDKVEA
ILQAEESVND VISVAGFDLL SGASSPSAAV VFASLKDPEE RGRVKNIGAI MGGVSQKLAS
ISEGTFFPFQ PPTVPGFGNV GGLEMVLQDR TSGSLEKFGE TANGFIGALM ARPEIAFAFT
TFNTGYPQHE LVVDDVKASQ LGVRVDEVLM VMQAYYGSLQ VSDFNRFGKY YRVIVQAEAE
DRRDPSSLDG VFVKNAMGEM VPMNSLVTLK KVYGPQTVDH FNLFNALTVN AVVSPGYTTG
QAIGAAEEVA ATALPAGFSY DWKGMSREEI ESGSQAVYIF LLSLVFVYLL LSAQYESYIL
PLAVIFTIPT GILGVFVGIQ LFGVENNIYV QVAMIMLIGL LAKNAILIVE FAIQRRKSGY
SLFESALEGS RVRLRPILMT SFTFALGLLP LLWVSGPSAL GNHSIGAAAV GGMLSGTFLG
VLIIPVLYMV FQSLQEKISG PPQEPESDGA VK