Gene Cphamn1_1067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1067 
Symbol 
ID6374741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1154557 
End bp1155732 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content52% 
IMG OID642683569 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_001959487 
Protein GI189500017 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000252486 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000793327 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGAAGC GTATCGGAAA AAGATTTGGG GTGTTGTGCG TTACCATGCT TGCTCTATCG 
CTTTCAGGGT GCGGCAGTGG TGCCGGAACC GGAGGTGCGG GAGCACAGCA GCAGGCGCCG
TCACTTCCTG TGATGAACAT CGGGTCTTCT TCAACGGTGG TGATGCAACA GTATTCCGCT
CTACTTGAAG GAGTTGTTAC GGTTGAAATC AGACCTCAGG TTGATGGAAC TCTGCAGGAG
ATAGCCGTCG ATGAAGGAGC TTTTGTCAAA GCAGGTCAGT TGCTTTTCGG TATTGACGGT
AGGGTCTACA GGGAAGAGCT GAAATCGGCT GTTGCTCTGC AACATGCTGC AAAAGCTGCT
CTCGACGTTG CAGGGGTAGA GGTGGAGAGG CTCAGGCCGC TGGTAAAAAA CAAGGTTGTA
TCGGCAATAC AGCTGAAGCA GGCTTTGGCA AAACATCGCT CGGCAAAGGC AAGCCTCGAA
CAGGCTGATG CGGCCGTTCA GATGGCCCGT ATCAACGTTG AGTATACCAG GATAACGGCG
CCTGTTGATG GGTATATCGG CAATATTCCC TTTCGTATCG GCAGTCTGGT GAGCAAAAAT
CAGCCGGAAC AGTTGACCAC GCTTACCGAT GTGCACGAGA TACGGGCCTA TTTCAGTATG
AGCGAGGTTG ATTTTGTGCG TTTCAAAAAG CAGTTTTCCG GCAGTTCAAT CGAGGAAAAG
CTTGCCGCCG TACCACCGGT TACCCTGCTT CTTGCCGATG GTAGCCGTTA TCCTTTCGAA
GGCAGGCTCG ACGCGGTCAG CGGCCAGTTT GATCGTTCTA CGGCTTCAGT CATGTTTCGG
GCGACCTTTC CAAATGCCGA CGGAATGCTT CGTTCAGGTA ACACAGGAAA AGTTTCCATT
GCCAACCGTT ACGATAATGT TGTGCAGGTT CCCCAGGCAA GCACGGCGGA TCTTCAGGAC
AGGATCTTTG TATTCAAGGT TTCCGGGGAC AACAGTGTAT CGAGAGCCCC GATAACCGTT
GTCGGTAAAA GCAATTCCAA TTATATCGTC AGCGATGGCC TTGAAGATGG CGATATGATT
GTCGTGTCCG GGTTCTCACG TTTACCGGAC GGGACAGTGA TCGATCCACA GCCTCTTGAA
GAAGGCAACC CCGATAAGAA AGAGCAGCAT CGATGA
 
Protein sequence
MAKRIGKRFG VLCVTMLALS LSGCGSGAGT GGAGAQQQAP SLPVMNIGSS STVVMQQYSA 
LLEGVVTVEI RPQVDGTLQE IAVDEGAFVK AGQLLFGIDG RVYREELKSA VALQHAAKAA
LDVAGVEVER LRPLVKNKVV SAIQLKQALA KHRSAKASLE QADAAVQMAR INVEYTRITA
PVDGYIGNIP FRIGSLVSKN QPEQLTTLTD VHEIRAYFSM SEVDFVRFKK QFSGSSIEEK
LAAVPPVTLL LADGSRYPFE GRLDAVSGQF DRSTASVMFR ATFPNADGML RSGNTGKVSI
ANRYDNVVQV PQASTADLQD RIFVFKVSGD NSVSRAPITV VGKSNSNYIV SDGLEDGDMI
VVSGFSRLPD GTVIDPQPLE EGNPDKKEQH R