Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1067 |
Symbol | |
ID | 6374741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 1154557 |
End bp | 1155732 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642683569 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001959487 |
Protein GI | 189500017 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000252486 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000793327 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAAGC GTATCGGAAA AAGATTTGGG GTGTTGTGCG TTACCATGCT TGCTCTATCG CTTTCAGGGT GCGGCAGTGG TGCCGGAACC GGAGGTGCGG GAGCACAGCA GCAGGCGCCG TCACTTCCTG TGATGAACAT CGGGTCTTCT TCAACGGTGG TGATGCAACA GTATTCCGCT CTACTTGAAG GAGTTGTTAC GGTTGAAATC AGACCTCAGG TTGATGGAAC TCTGCAGGAG ATAGCCGTCG ATGAAGGAGC TTTTGTCAAA GCAGGTCAGT TGCTTTTCGG TATTGACGGT AGGGTCTACA GGGAAGAGCT GAAATCGGCT GTTGCTCTGC AACATGCTGC AAAAGCTGCT CTCGACGTTG CAGGGGTAGA GGTGGAGAGG CTCAGGCCGC TGGTAAAAAA CAAGGTTGTA TCGGCAATAC AGCTGAAGCA GGCTTTGGCA AAACATCGCT CGGCAAAGGC AAGCCTCGAA CAGGCTGATG CGGCCGTTCA GATGGCCCGT ATCAACGTTG AGTATACCAG GATAACGGCG CCTGTTGATG GGTATATCGG CAATATTCCC TTTCGTATCG GCAGTCTGGT GAGCAAAAAT CAGCCGGAAC AGTTGACCAC GCTTACCGAT GTGCACGAGA TACGGGCCTA TTTCAGTATG AGCGAGGTTG ATTTTGTGCG TTTCAAAAAG CAGTTTTCCG GCAGTTCAAT CGAGGAAAAG CTTGCCGCCG TACCACCGGT TACCCTGCTT CTTGCCGATG GTAGCCGTTA TCCTTTCGAA GGCAGGCTCG ACGCGGTCAG CGGCCAGTTT GATCGTTCTA CGGCTTCAGT CATGTTTCGG GCGACCTTTC CAAATGCCGA CGGAATGCTT CGTTCAGGTA ACACAGGAAA AGTTTCCATT GCCAACCGTT ACGATAATGT TGTGCAGGTT CCCCAGGCAA GCACGGCGGA TCTTCAGGAC AGGATCTTTG TATTCAAGGT TTCCGGGGAC AACAGTGTAT CGAGAGCCCC GATAACCGTT GTCGGTAAAA GCAATTCCAA TTATATCGTC AGCGATGGCC TTGAAGATGG CGATATGATT GTCGTGTCCG GGTTCTCACG TTTACCGGAC GGGACAGTGA TCGATCCACA GCCTCTTGAA GAAGGCAACC CCGATAAGAA AGAGCAGCAT CGATGA
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Protein sequence | MAKRIGKRFG VLCVTMLALS LSGCGSGAGT GGAGAQQQAP SLPVMNIGSS STVVMQQYSA LLEGVVTVEI RPQVDGTLQE IAVDEGAFVK AGQLLFGIDG RVYREELKSA VALQHAAKAA LDVAGVEVER LRPLVKNKVV SAIQLKQALA KHRSAKASLE QADAAVQMAR INVEYTRITA PVDGYIGNIP FRIGSLVSKN QPEQLTTLTD VHEIRAYFSM SEVDFVRFKK QFSGSSIEEK LAAVPPVTLL LADGSRYPFE GRLDAVSGQF DRSTASVMFR ATFPNADGML RSGNTGKVSI ANRYDNVVQV PQASTADLQD RIFVFKVSGD NSVSRAPITV VGKSNSNYIV SDGLEDGDMI VVSGFSRLPD GTVIDPQPLE EGNPDKKEQH R
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