| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0472 |
|---|
| Symbol | |
|---|
| ID | 6374136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 493696 |
|---|
| End bp | 495480 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642682990 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001958917 |
|---|
| Protein GI | 189499447 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.524488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA AGCCATCGAA GCCGTTAGAG ATAATTGTTG GTGAGGGCAC ATGCGGTATA
GCGGCAGGGT CGAAAGATGT TATAGATATA TTCACTGAAC TTGCTCCTGA AGCGGCAATA
AAAAGTGTCG GATGTGCAGG AATGTGTCAC GATGAAGTTA TGGTTGAGAT TATCGACGAG
AAGAGAGGCG CCTGTCTCTA CAGGAAAGTC GATAAGAAAA ACATTCCTGA TCTTCTGAGT
TTTCACAGGG GTGAAGGAAA GGTGCGGCAG GACCTGTTGA TCCGCTCTTC CATGCCGTCA
GTCGGGGCTG ATTATCTTGA CCGCCAGACA AGGATAGCCT TGCGCAATAT CGGGCAGGTC
GACCCTCAAT CTCTGGATGC ATACAGAGAG AGGGGAGGCT ACCGTTCGAT AGAAAAAATT
ATCACGGAGG GGATCAAGCC TGAACAGGTA ATCGAGGAGG TACGAGTATC CGGTTTGCGA
GGCCGTGGAG GAGCAGGTTT TCCGACAGCG GTTAAATGGG GATTCGCCCG TTCCGCGAAG
GGTGAAAAGA AATATCTGAT CTGTAATGGT GATGAGGGTG ATCCGGGGGC TTTCATGGAT
CGTTCTCTGC TGGAAGGCGA TCCGCATAAT GCCCTTGAGG GCATGCTTAT AGCTGCCTAT
GCGATCGGAG CCTCTTCCGG GTACGCCTAT ATCCGGGCGG AATATCCTCT GGCTGTTGAG
CATTTCAGAA AGGCTATAGA TGATGCAAGA AAGGCAGGGC TTCTCGGTAA CAACATACTT
GGAAGTTCAT TTGATTTTGA CGTTACCATT AAACAGGGCG CAGGAGCTTT CGTCTGTGGT
GAAGAGACCG CGCTGATCGC ATCTATCGAG GGTGAACGCG GGATGCCGCG TATTCGTCCG
CCTTTTCCTG CGGTCAAGGG GCTTTTCGGG AAACCGACGA TTATCAACAA TGTCGAGTCG
CTTGCCAACC TTCCGTGGAT CATTGAGCAT GGCGGTGCAG CTTACGCGGA AATCGGGACC
GAGAAGAGCA AGGGGACGAA AGTATTTGCT CTTGCAGGAC CTATAAAGCG TGGCGGCCTT
GTCGAAGTTC CTATGGGGAC GACGGTTCGG GAAGTTCTTT ACGATATCGG GGGAGGTTCA
TCTGCCGGCA GGCCGATCAA GGCCGTGCAG CTTGGCGGCC CGAGCGGAGG ATGTATTCCG
GAATCACTTT TCGATACACC TATCGAATAT GAAGCGCTCA ATGCAACAGG TGCTATCATG
GGTTCGGGTG GTATGGTTGT CATGGACACC AAATCATGTA TGGTTGATAT TGCCCGATAT
TTTCTCGAGT TCACCCAGAT CGAATCCTGC GGCAAGTGTA CCTTCTGCAG GATTGGTACT
CTTCGTATGA AAGAGCTGCT GACCAGGATC TGCGATGGTC AGGGAACGAT GGATGACATC
GATACGTTGG AAGATATTGC TCATCAGGTG AGATCATCCA GCCTTTGCGG ATTGGGTCAG
ACCGCCCCCA ATCCGGTACT GACGACACTG AAATATTTCA GAGATGAATA TGTCGCTCAT
GTTGAGGAGA AACGGTGCCC GGCAGGTGTC TGTAAAGGGC TTATCACCCA TACCATTATG
CAGGATACCT GTACAGGTTG TTCAATCTGT GAACGGTACT GTCCGGTTGA CGCGATTACC
GGAGTGATCA AAAAGCCCGA AAGCTGGGTG ATTGACCACG ACCTCTGTGT TAATTGTGGT
ATGTGTGTTG AAGTTTGTAA TTCTGATGCT ATCAGCGTTG CATAA
|
|---|
| Protein sequence | MNQKPSKPLE IIVGEGTCGI AAGSKDVIDI FTELAPEAAI KSVGCAGMCH DEVMVEIIDE
KRGACLYRKV DKKNIPDLLS FHRGEGKVRQ DLLIRSSMPS VGADYLDRQT RIALRNIGQV
DPQSLDAYRE RGGYRSIEKI ITEGIKPEQV IEEVRVSGLR GRGGAGFPTA VKWGFARSAK
GEKKYLICNG DEGDPGAFMD RSLLEGDPHN ALEGMLIAAY AIGASSGYAY IRAEYPLAVE
HFRKAIDDAR KAGLLGNNIL GSSFDFDVTI KQGAGAFVCG EETALIASIE GERGMPRIRP
PFPAVKGLFG KPTIINNVES LANLPWIIEH GGAAYAEIGT EKSKGTKVFA LAGPIKRGGL
VEVPMGTTVR EVLYDIGGGS SAGRPIKAVQ LGGPSGGCIP ESLFDTPIEY EALNATGAIM
GSGGMVVMDT KSCMVDIARY FLEFTQIESC GKCTFCRIGT LRMKELLTRI CDGQGTMDDI
DTLEDIAHQV RSSSLCGLGQ TAPNPVLTTL KYFRDEYVAH VEEKRCPAGV CKGLITHTIM
QDTCTGCSIC ERYCPVDAIT GVIKKPESWV IDHDLCVNCG MCVEVCNSDA ISVA
|
|---|
| |