| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0319 |
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| Symbol | rpoB |
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| ID | 6373979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 315255 |
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| End bp | 319163 |
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| Gene Length | 3909 bp |
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| Protein Length | 1302 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642682838 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001958769 |
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| Protein GI | 189499299 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.672728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00209442 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGTGG CTGATAAAAC ACAGAAAAAG TGTATTGCCT TTTCCAAGAT CCAGAGTATT
GTAAATCCTC CTGATTTATT ACAAGTTCAG TTAGATTCGT TCAAGAGGTT CATTCAGGAC
AGTGTTCCTC TTGCCAAACG TAAAGACCAG GGGCTTGAAA AGGTACTGAG AAGTGCTTTT
CCGATTACTG ATACCCGGGG TCTTTATCTA TTAGAATATA TATCATATAC ATTTGACAAA
CCGAAATATA CTGTCGAGGA GTGTATTGAG AGGGGCCTGA CCTACGATGT TTCACTGAAG
GTCAAGTTGA AACTCTCCTA CAAGGATGAG CCCGATGAGC AGGACTGGAA AGAGACTATC
CAGCAGGAGG TATATCTCGG ACGTATTCCC TATATGACCG ACCGCGGTAC ATTTATTGTG
AATGGAGCGG AGCGGGTTGT CGTTGCACAG CTTCATCGTT CGCCCGGTGT TGTTTTCAGT
GAGGCTATAC ATCCGAACGG CAAAAAGATG TATTCCGCAA AGATTGTGCC GACACGAGGG
TCCTGGATTG AGTTCCAGAC CGATATAAAT AATCAGATCT ATGTCTATAT CGACCAGAAA
AAGAACTTTC TTGTCAGTGC ATTGCTTCGC GCCATCGGGT TTACAAAAGA TGAGGATATC
CTCAGTCTGT TCGATCTGAT CGAAGAGGTT CCGGTAAAAG CCAACAAGAA AGAGTACCTT
ATCGGCAAGA ACCTTGCGTC TGATATCATC GATATGCAGA CAGGTGAGGT TGTCAGTGCC
AGAACGGCGA TTACAGAGGA GATACTGGAT CAGATTACCG CAGCGGGCTC CAAGACGGTC
AGGATCATGA AACCCGGTAC GGGCGAGAAG GGACTCGATA AATCTGTTGT CACCAATACC
ATTCTCAATG ATTCTTCCGC AACAGAGGAA GAGGCTCTGG AGATTGTCTA CGAGGAGCTT
CGCGCAAACG AGGCGCCGGA TATTGACGCC GCGAGAAGTT TTCTTGAAAG AACGTTTTTC
AATCAGAAAA AATATGATCT GGGAGACGTA GGCCGATACA GAATCAATAA GAAACTCGGG
AAGGAACATG AAGCTTTCAA AGAGTTTCTC AGTGGACAAC CCGAACTGAA GGCGCTGTCC
GACAGTATTT ACGAGAAAAT TCTCCAGACG ATACAGTCAT ATTCAGACGA GCCGATAAGC
GATGATATCA TGGTGTTGAC ACACTATGAT ATCATTGCGG TTATCAACTA TCTCATCAAA
CTGGTGAACG GACAGGCAGA AGTTGACGAT GTTGACCATC TCGCGAACAG AAGAGTGCGA
ACGGTTGGTG AACAGCTCGC GGCACAGTTT GTTATAGGGC TTGCAAGAAT GGGCAAAAAC
GTCCGTGAAA AACTTAATTC ACGTGATACG GACAAGATAG CTCCTGCTGA TCTTATTAAC
GCAAGAACGG TATCGAGTGT TGTTTCGAGC TTTTTCGCTA CAAGTCAGCT TTCGCAGTTC
ATGGATCAGA CAAACCCGCT TGCCGAAATG ACCAACAAGC GGAGGGTTTC CGCTCTTGGC
CCGGGTGGTC TTACCAGGGA ACGCGCAGGT TTTGAGGTTC GTGACGTTCA CTATACGCAT
TATGGCCGTC TCTGCCCTAT CGAGACGCCG GAAGGCCCCA ATATAGGGTT GATTTCTTCG
TTGTCGGTCT ATGCGGAGAT CAATGATAAA GGGTTTATCC AGGCCCCGTA CCGTGTCGTC
GAGAAAGGTA TAGTGACCGA CAAGGTCGAG ATGCTTTCGG CCGAGGACGA AGAGAACAAG
ATCACTGTTC CGGTCAGCGT GAAATTTGAC GAGAACAGGA GAATAACCAC GGAAACGGTT
CAGGCGAGAA CAAAGGGTGA TTACCCTGTC GTTGACGCCG AACAGGTGGA TTATATGGAT
GTCTCGCCGA TTCAGATTGT CAGCGCGGCA GCGGCTCTGA TTCCTTTTCT TGAGCATGAT
GACGGTAACC GCGCTCTTAT GGGAGCAAAC ATGCAGAGGC AGGCTGTTCC GCTTCTTGTT
GCTGACGCGC CGCTGGTAGG TACCGGTATG GAAGCCAAAG TTGCACGTGA CTCCCGGGCG
GTGGTTCTTG CCGAAGGAGA TGGTGTTATA GAGTCGGTTA CCGCGGAAAG TATCCGTGTC
CGCTATGACA TGCATGAAGA TGAAGATGAT CGGATGATCA TGCTGGATCC GGATGAAGGG
GTCAAGACCT ACAATCTGAT CAAGTTTAAA CGTTCTAACC AGGACACCTG CATCTCTCAG
AAACCGGTCG TACGGACAGG TCAGAAACTT GAGAAAGGAG ATGTGCTCGC TGACGGTCCG
TCCACTGAAA ATGGTGAGCT GGCGCTCGGC AAGAACGTGC TTGTCGCATT CATGCCCTGG
AGAGGCTATA ACTTTGAAGA CGCTATTGTT CTCAGTGAGC GTCTGGTTTA TGATGATGTG
TTCACATCGA TCCACATTCA TGAGTTCGAA GCCAATGTCC GCGACACGAA GCGTGGTGAG
GAACAGTTCA CCCGTGACAT TTACAATGTC AGTGAAGATG CGTTGAGAAA CCTTGACGAG
AACGGTATTA TTCGTATCGG TGCGGAGGTC AAGGAACGTG ATATCCTTGT CGGCAAGATT
ACGCCGAAAG GGGAAAGTGA TCCTACTCCG GAAGAAAAAC TGCTTCGAGC CATTTTTGGT
GACAAGTCCA GTGATGTGAA AGATGCATCG ATGCATGTTC CTGCAGGAAT GAAGGGAATT
GTGATCAAGA CAAAGCTGTT CAGTCGCAAA AAGAAGGTCG GCCTGGATAT CAGGGAGCGG
CAGGAGGCGA TTGACGCCTT GTTCGAACGC AGGACAGCGG ATCTCCGGAG CCGCTTCAAC
ACGTGGATGA ACCAGCTTTT TGAGGGTAAA AAGAGTACGG GAATCTACAA TCTGAAGGGA
AAAGAGATTG TTCCTGCCGG AAGTGTACTT GATGCAGAAA CGCTTGGCAA GTTTGCCGGT
CCCGGTTTTC TTGAATCTGT GGACCTCTCC AAAGGTATCG TCAAGGACGC GAAAGCCAAC
GCGACGCTGC TTCGCCTCTG CAGAGAGTAT CGTCTCATGC TGAAGGATAT GGAAGATGAG
CGTGAGAATG AAAAATACAA GCTCAATATA GGAGATGAAC TTCCACCCGG AATTGAAGAG
CTTGCAAAGG TCTACATCGC GCAGAAAAGA AAAATACAGG TTGGCGACAA GATGGCCGGT
CGTCATGGTA ACAAGGGTGT GGTCGGAAAA ATACTGCCAA TTGAGGATTT GCCTTTCATG
GGAGACGGCA CGCCGGTTGA TATCGTCCTG AACCCTCTCG GTGTTCCGAG CAGGATGAAT
ATCGGTCAGC TTTATGAAAC CTCGCTCGGA TGGGCTGCAA GGGCACTCGG TGTTCAGTTT
AAAACGCCGA TTTTTGATGG CGCAACCTAC ACCGAGGTAC AGGAACAGCT TGAAAAAGCC
GGTCTGCCCA TGCACGGGAA AGTCAGGCTT TACGACGGCC GCACAGGAGA GCCTTTTGAT
GATGAGGTCA CGGTCGGATA CATCTATATG CTGAAACTGA GTCATCTTGT CGATGACAAG
ATTCACGCAC GTTCGACCGG TCCGTACTCG TTGATAACAC AGCAGCCGCT GGGCGGAAAA
GCGCAGTTCG GTGGTCAGCG GTTTGGTGAG ATGGAGGTAT GGGCACTTGA GGCATACGGC
GCGGCAAATA TTCTCAGAGA GATGCTTACC GTTAAATCAG ATGATGTCGT GGGGAGAAAC
AAGACCTACG AATCGATTGT CAAAGGCCAG AATCTTCCCG ATCCCGGAAC GCCGGAATCG
TTTAATGTGC TGGTCAGGGA GCTGCAGGGC CTTGGACTTG AAATACGTAT TGACAACAAG
GTTCCGTAG
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| Protein sequence | MKVADKTQKK CIAFSKIQSI VNPPDLLQVQ LDSFKRFIQD SVPLAKRKDQ GLEKVLRSAF
PITDTRGLYL LEYISYTFDK PKYTVEECIE RGLTYDVSLK VKLKLSYKDE PDEQDWKETI
QQEVYLGRIP YMTDRGTFIV NGAERVVVAQ LHRSPGVVFS EAIHPNGKKM YSAKIVPTRG
SWIEFQTDIN NQIYVYIDQK KNFLVSALLR AIGFTKDEDI LSLFDLIEEV PVKANKKEYL
IGKNLASDII DMQTGEVVSA RTAITEEILD QITAAGSKTV RIMKPGTGEK GLDKSVVTNT
ILNDSSATEE EALEIVYEEL RANEAPDIDA ARSFLERTFF NQKKYDLGDV GRYRINKKLG
KEHEAFKEFL SGQPELKALS DSIYEKILQT IQSYSDEPIS DDIMVLTHYD IIAVINYLIK
LVNGQAEVDD VDHLANRRVR TVGEQLAAQF VIGLARMGKN VREKLNSRDT DKIAPADLIN
ARTVSSVVSS FFATSQLSQF MDQTNPLAEM TNKRRVSALG PGGLTRERAG FEVRDVHYTH
YGRLCPIETP EGPNIGLISS LSVYAEINDK GFIQAPYRVV EKGIVTDKVE MLSAEDEENK
ITVPVSVKFD ENRRITTETV QARTKGDYPV VDAEQVDYMD VSPIQIVSAA AALIPFLEHD
DGNRALMGAN MQRQAVPLLV ADAPLVGTGM EAKVARDSRA VVLAEGDGVI ESVTAESIRV
RYDMHEDEDD RMIMLDPDEG VKTYNLIKFK RSNQDTCISQ KPVVRTGQKL EKGDVLADGP
STENGELALG KNVLVAFMPW RGYNFEDAIV LSERLVYDDV FTSIHIHEFE ANVRDTKRGE
EQFTRDIYNV SEDALRNLDE NGIIRIGAEV KERDILVGKI TPKGESDPTP EEKLLRAIFG
DKSSDVKDAS MHVPAGMKGI VIKTKLFSRK KKVGLDIRER QEAIDALFER RTADLRSRFN
TWMNQLFEGK KSTGIYNLKG KEIVPAGSVL DAETLGKFAG PGFLESVDLS KGIVKDAKAN
ATLLRLCREY RLMLKDMEDE RENEKYKLNI GDELPPGIEE LAKVYIAQKR KIQVGDKMAG
RHGNKGVVGK ILPIEDLPFM GDGTPVDIVL NPLGVPSRMN IGQLYETSLG WAARALGVQF
KTPIFDGATY TEVQEQLEKA GLPMHGKVRL YDGRTGEPFD DEVTVGYIYM LKLSHLVDDK
IHARSTGPYS LITQQPLGGK AQFGGQRFGE MEVWALEAYG AANILREMLT VKSDDVVGRN
KTYESIVKGQ NLPDPGTPES FNVLVRELQG LGLEIRIDNK VP
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