| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0316 |
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| Symbol | rplA |
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| ID | 6373976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 313377 |
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| End bp | 314066 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642682835 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001958766 |
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| Protein GI | 189499296 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000103871 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000950319 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAGGAA AGAAATACAG AAACGCTTTA GGTAAAGCGT CAGCTCAGGA TGAGTATGAT
CTGCAGCAGG CTATGGAGCT TGTCAGGGAG ATTAACGATA CGAAATTCGA TGCATCGGTT
GATCTGGCTG TAAGGCTGGG TGTTGACCCG CGTCACGCCG ATCAGGTTGT CAGGGGGACA
GTCATGTTGC CTCATGGGAC GGGTAAGACT GTGTCGGTTC TTGTGATCTG CAGTGAAGCG
AAAGCTTCCG AAGCGCAAGA GGCCGGAGCG GACTTCGTGG GATTTGAAGA TTATATTGAA
AAAATTCAGA ATGGCTGGAC AGATGTCGAT GTCATCATAG CTACGCCTGA TGTTATGGGT
AAGCTTGGCA AAGTCGGCAA GATTCTTGGT CCCCGTGGTC TCATGCCCAA TCCGAAATCA
GGTACGGTTA CCATGGATGT CGCCAAGGCT GTTAAGGAAG TAAAGGCTGG TAAAATCGAA
TTTCGGGTAG ATAAGGCTGG AAACGTTCAC GCGCCCGTCG GAAAGGTATC GTTCAGTTCT
GAACAGCTTT TCGAAAACGC TACGAGTTTT CTCAAGGAGA TCGTCAGGTT GAAGCCGGCT
GCTGCCAAAG GGCACTACAT CCGGAATATT TCCGTGTCAA GTACGATGTC CCCCGGCCTG
AGGGTGAAAA AAGAAAAGTA TGTCGCCTAA
|
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| Protein sequence | MAGKKYRNAL GKASAQDEYD LQQAMELVRE INDTKFDASV DLAVRLGVDP RHADQVVRGT
VMLPHGTGKT VSVLVICSEA KASEAQEAGA DFVGFEDYIE KIQNGWTDVD VIIATPDVMG
KLGKVGKILG PRGLMPNPKS GTVTMDVAKA VKEVKAGKIE FRVDKAGNVH APVGKVSFSS
EQLFENATSF LKEIVRLKPA AAKGHYIRNI SVSSTMSPGL RVKKEKYVA
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