| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aasi_1396 |
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| Symbol | rpoB |
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| ID | 6377582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Amoebophilus asiaticus 5a2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010830 |
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| Strand | - |
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| Start bp | 1779731 |
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| End bp | 1783591 |
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| Gene Length | 3861 bp |
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| Protein Length | 1286 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 642682467 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001958421 |
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| Protein GI | 189502704 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTT CAAGAATCAG TTTTGCTGCC ACTCAAAGTG TTTCTGAATA TCCGGACTTC
CTTGAAATAC AACTTAAGTC ATTTAATGAT TTTTTCCAAC TAGGTACGCC ACCTGAAAAA
AGAATTGATG AAGGGCTACA CAAAGTATTT AGAGAACACT TTCCCATAGA AGATTCCAGA
GGAAATTTTG TACTAGAATT CATTGACTAT AACCTTGATG CTCCTAAGTA TGAACCCAGA
GAATGTGTGG AAAGGGGAGT AACTTATTCT GTACCTCTTA AAGCAAAATT AAGGCTACTA
CGTAATGATA ATGATGATGA TGAGTTTGAA ACTATAGAGC AAGAAGTTTT TTTAGGCAAT
ATTCCTTATA TGACCTCACA AGGCTCCTTT ATAATCAATG GAGCAGAACG TGTGGTTGTC
TCTCAAATAC ATAAATCTCC TGGCGTATTT TTTGCTCAAA GTAAACACAT TAGCGGTGCT
AAGCTATACT CTGCTCGTAT TATACCTTTC AAAGGTGCTT GGATAGAATT TGCTACGGAT
GTTAATAACA TCATGTATGC CTATATAGAC CGTAAGAAGA AATTCCCAAT AACTACCCTT
TTAAGGGCTA TTGGCTATGG TACTGATAAA GAAATTTTAG ACCTTTTTGA ATTATCTGAA
GAAATAAAGG TTACTAAATC TACTTTAAAC CAACATATTG GTAGAAAGTT GGCTGCAAGA
GTACTTAGGT CTTGGTCCGA AGACTTTATA GATGAGGACA CCGGTGAAGT TATTACACTA
GATCGTAATG AAGTGGTCTT AGAAAGAAAC TCCATTCTTG ATGAAACTGC TGTAGAGCTT
ATATTGCAGT CTGGCAGTTC TTCTGTTGTA TTGTATAGAG AAGATATTAA TATTGCTGAC
TACGAAATTA TATATAATAC TTTACATAAA GATAATGCCA ACTCCGAGAA AGAAGCTGTA
GAGCAAATAT ATCGCCAGCT TCGTAGCTCT GAACCACCTG ATGAACAAAC AGCACGTGAG
GCTATACAAA GCTTGTTTTT TAGTACTAAA AGATACAGCT TAGGTGAAGT TGGACGTTAT
AAAATCAATA CTAAGCTAGG CATTAATATA GCCATGGATG TTAGTGTTCT TACAAAAGAA
GATATCCTAC ATATTGTTAA ATACTTACTT GGACTTATTA ATTCTAAAGC TACAGTAGAC
GACATAGACC ATTTAAGTAA TAGGAGATTA CGTACTGTAG GCGAACAGCT TTATACTCAA
TTTGAATTAG GGCTATCTAG AATGGCACGT ACCATCCGAG AAAGGATGAA TGTAAGAGAT
AATGAAGAGT TCAAGCCTAG TGACCTAGTA AATGCCAGGA CACTTTCATC GGTTATCAAT
ACTTTCTTTG GTACTAATCC ATTATCTCAG TTTATGGACC AAGTTAACCC TTTATCAGAG
GTTACCCATA AACGTAGGAT ATCTGCGCTA GGGCCTGGTG GACTTTCTAG AGACCGAGCA
GGCTTTGAAA TCAGGGATAT CCATTACACA CACTACGGGC GTCTGTGTCC TGTTGAAACA
CCTGAAGGGC CTAATATTGG TTTGATATCT TCTTTATCTG TACATGCGAG AATTAATGAA
ATGGGATTTA TTGTAACTCC CTATAGAAAG GTACAGAATG GTGTAGTAGA TGTAGAAGGA
AATACTCAAT ACCTTACTGC TGAGCAAGAA GATAAAGTAA AAATTGCACA GGCTAATTCT
CAAATCAATG AAAAAGGACA TTTTATAGAA GAAAAGGTAA AAACAAGATA TGCAGGAGAT
TTCCCAATCG TAGGGCCAGA GGACATTACT TATATGGATA TAGCACCTAA CCAAATTGTG
TCCATATCTG CTTCACTTAT TCCATTCTTA GAGCATAATG ATGCGAGCCG TGCGCTCATG
GGTTCAAACA TGCAGCGTCA ATCCGTGCCA CTCATTAAGC CCGAGGCACC TATTATTGGT
ACAGGTATAG AACAGCACAT AGCCCATGAT TTCAGAGGAT TGGTGCGTGC TGAAAAGGAT
GGTGTAATAG AGTATGTAGA TGCGAATAAA ATTATAGTTA ATTATGATCT TAATGAAGAC
GAAAAACTAG TATCCTTTGA AAGAGCTTCT ATAACTTATC CTTTGCTTAA AATGAAAGGT
ACCAACCAAG GTACTTGTAT TAACCTAAGG CCTATCGTAG CTAAAGGTGA TCGTGTAAAG
CAAGGACAAA TCTTATGCGA AGGATATGCA ACAGAGAATG GTGAGCTAGC TTTAGGCCGT
AATTTAAAGG TGGCTTTTAT GTCTTGGCAG GGTTATAACT ACGAGGATGC TATTGTTATT
TCAGAAAGAA TAGTTAGAGA CGACGTGTTT ACTTCTATTC ATATAGAAGA GTTCACTATG
GAAGCAAGAG ACACTAAGCT TGGTGAAGAA GAATTAACAG CTGAAATTCC TAATTTAAGC
GAAGAAGCAT TAACTAATTT AGACAAAAAT GGAATTGTCG CGGTTGGTAC TTCTATTAAA
GAAGGAGATG TATTAATTGG AAAAATAACG CCTAAAGGAG AAGCTGATCC TAGTCCTGAA
GAAAAGCTTT TACGCGCTAT CTTTGGTGAT AAAGCAGGAG ATGTAAAAGA TGCTTCTCTG
AAAGTTCCGC CTTCTATGCA AGGTGTAGTT ATTAAGACAC GATTATTCTC AAAGCCTAAA
AGCGATAAGA ATTCTCGTGC TAAATCAAAA AAGGAACTAG AACTACTGAA AAAATCGCAT
GCAAAACAAT TAACAAACCT GCGTGCAATT ATGATAGGTA AACTAGGCAA GCTATTAGAA
AGCGAAAAGT CGCAAGGTGT TTATCATCAA TTTGGTGATG AGTTAATAGC AAAAGGTAAG
CCGCTTACTG CTGAGCTAAT TGAAAAGAAC TTGTTCCCAG GCAAAAACTT ATACAGGGAC
GAAAGCTATT ATAATATCCC TGAAGAAACC AACTTAATAG GTGAAGTTAT TCTTGATAAC
TGGACAGACA ATAAAAGGAA AAATGAACTA GTTAAAACTT TGGTAGCTAA TTATAATACC
AAAAGGAATA TGCTAATAGG AGATTTTAGA AGAGAGAAAT TTGCTTTAGA AATAGGGGAC
GAGTTACCTA CAGGTATTCT TAAATTAGCA AAAGTATACG TTGCCAATAA ACGTAAACTA
CAAGCTGGTG ATAAGATGGC TGGTAGACAT GGTAACAAGG GGATTGTTGC TAAAGTAGTA
AGAGAGGAAG ATATGCCTTT CCTAGAAGAT GGAACACCTG TAGATATCGT ATTGAGCCCG
CTTGGATTAC CTTCTCGTAT GAACTTGGGG CAGATTTATG AAACCCTTTT AGGGTGGGCT
GGTGAAAAGC TAGGTAGGAA ATATGCTACT CCTATTTTTG ACGGTGCTAC TATAGAAGAT
GTAAGCAAAG AATTAGCAGA AGCTAATCTG CCAGCATTTG GAAAAGCTGA TTTATATGAT
GGCCTTACTG GAGAGAAATT TGATCAGCAA ATTACGGTGG GTGTTATATA CATGTTAAAA
CTAGACCACT TAGTGGATGA TAAAATGCAT GCGCGTTCTA TTGGACCGTA CTCTTTAATT
ACCCAACAGC CACTAGGCGG TAGATCGCAA TTTGGAGGAC AACGTTTTGG AGAGATGGAA
GTGTGGGCAC TAGAAGCTTT TGGTGCAGCA CACATCTTAC AAGAAATGTT AACTATAAAA
TCGGATGATG TAGTAGGACG TTCAAAAGCT TATGAAGCTA TCGTAAAAGG TACCAGTTTC
CCTAAACCAG GAATACCAGA ATCCTTTAAC GTACTAATTC ATGAATTGAG AGGACTAGGG
TTGGAGATTA CACTTAAATA A
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| Protein sequence | MKSSRISFAA TQSVSEYPDF LEIQLKSFND FFQLGTPPEK RIDEGLHKVF REHFPIEDSR
GNFVLEFIDY NLDAPKYEPR ECVERGVTYS VPLKAKLRLL RNDNDDDEFE TIEQEVFLGN
IPYMTSQGSF IINGAERVVV SQIHKSPGVF FAQSKHISGA KLYSARIIPF KGAWIEFATD
VNNIMYAYID RKKKFPITTL LRAIGYGTDK EILDLFELSE EIKVTKSTLN QHIGRKLAAR
VLRSWSEDFI DEDTGEVITL DRNEVVLERN SILDETAVEL ILQSGSSSVV LYREDINIAD
YEIIYNTLHK DNANSEKEAV EQIYRQLRSS EPPDEQTARE AIQSLFFSTK RYSLGEVGRY
KINTKLGINI AMDVSVLTKE DILHIVKYLL GLINSKATVD DIDHLSNRRL RTVGEQLYTQ
FELGLSRMAR TIRERMNVRD NEEFKPSDLV NARTLSSVIN TFFGTNPLSQ FMDQVNPLSE
VTHKRRISAL GPGGLSRDRA GFEIRDIHYT HYGRLCPVET PEGPNIGLIS SLSVHARINE
MGFIVTPYRK VQNGVVDVEG NTQYLTAEQE DKVKIAQANS QINEKGHFIE EKVKTRYAGD
FPIVGPEDIT YMDIAPNQIV SISASLIPFL EHNDASRALM GSNMQRQSVP LIKPEAPIIG
TGIEQHIAHD FRGLVRAEKD GVIEYVDANK IIVNYDLNED EKLVSFERAS ITYPLLKMKG
TNQGTCINLR PIVAKGDRVK QGQILCEGYA TENGELALGR NLKVAFMSWQ GYNYEDAIVI
SERIVRDDVF TSIHIEEFTM EARDTKLGEE ELTAEIPNLS EEALTNLDKN GIVAVGTSIK
EGDVLIGKIT PKGEADPSPE EKLLRAIFGD KAGDVKDASL KVPPSMQGVV IKTRLFSKPK
SDKNSRAKSK KELELLKKSH AKQLTNLRAI MIGKLGKLLE SEKSQGVYHQ FGDELIAKGK
PLTAELIEKN LFPGKNLYRD ESYYNIPEET NLIGEVILDN WTDNKRKNEL VKTLVANYNT
KRNMLIGDFR REKFALEIGD ELPTGILKLA KVYVANKRKL QAGDKMAGRH GNKGIVAKVV
REEDMPFLED GTPVDIVLSP LGLPSRMNLG QIYETLLGWA GEKLGRKYAT PIFDGATIED
VSKELAEANL PAFGKADLYD GLTGEKFDQQ ITVGVIYMLK LDHLVDDKMH ARSIGPYSLI
TQQPLGGRSQ FGGQRFGEME VWALEAFGAA HILQEMLTIK SDDVVGRSKA YEAIVKGTSF
PKPGIPESFN VLIHELRGLG LEITLK
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