Gene Aasi_0197 details

Gene Information

• Locus tag: Aasi_0197
• Symbol: rplC
• ID: 6377716
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Amoebophilus asiaticus 5a2
• Kingdom: Bacteria
• Replicon accession: NC_010830
• Strand: -
• Start bp: 209705
• End bp: 210337
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 642681386
• Product: 50S ribosomal protein L3
• Protein accession: YP_001957371
• Protein GI: 189501654
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.555383
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTTGGAA TCATTGGTAA AAAACTTGGC ATGACAACAC TTTATGATGA GGCAGGACGT 
AGTGTTCCTT GTACTGTCAT AACGGGAGGA CCTTGTGTAG TTACCCAAAT TAAAAATATT 
GAAAAAGATG GCTATACAGC TGTTCAGTTA GGTTACGACG ATAAAAAAGA AAAAAATACC 
GTCAAGCCAC TTATGGGCCA TTTTCAAAAA GCTCAAACTA CACCTAAAAG GAAGCTAGTG 
GAATTCAAAG AGTTTGGTAA GGAGTTAGGA AAGGAAATCC AGCTAGGACA AACAATCCAG 
TTGCATGATA TTTTTGTAGA AGGTGAATAT GTAGATGCAA TAGGGCTTAG TAAAGGAAAG 
GGATTTCAGG GTGTGGTAAA AAGGCATGGA TTTAGCGGGG TTGGAGGTAA GTCGCATGGA 
CAGCACAATA GGGAAAGGGC TCCTGGAGCT ATTGGGGCTT GTTCTACTCC TTCTCGTGTT 
TTTAAAGGAA TGCGTATGGC AGGTAGAACA GGAGGTCAGC GAGTTAAAAT AACAAATCTT 
CGTATAATGA AGCTCGTGCC AGAAAAAAAT ATTTTGGTAA TAAGTGGTTC TGTGCCAGGC 
GCAAAGAATG GTTACATCAT TTTAGAAAAA TAG 

 

Protein sequence

MLGIIGKKLG MTTLYDEAGR SVPCTVITGG PCVVTQIKNI EKDGYTAVQL GYDDKKEKNT 
VKPLMGHFQK AQTTPKRKLV EFKEFGKELG KEIQLGQTIQ LHDIFVEGEY VDAIGLSKGK 
GFQGVVKRHG FSGVGGKSHG QHNRERAPGA IGACSTPSRV FKGMRMAGRT GGQRVKITNL 
RIMKLVPEKN ILVISGSVPG AKNGYIILEK