Gene Aasi_0180 details

Gene Information

• Locus tag: Aasi_0180
• Symbol: rpsE
• ID: 6376614
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Amoebophilus asiaticus 5a2
• Kingdom: Bacteria
• Replicon accession: NC_010830
• Strand: -
• Start bp: 202043
• End bp: 202558
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 642681369
• Product: 30S ribosomal protein S5
• Protein accession: YP_001957354
• Protein GI: 189501637
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.280256
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATGCAAC TAAAGAAAAT AATTAAACCA AGCGAACTTA ATCTAACAGA GAAAGTTGTT 
GCCATTAACC GTGTGACAAA GGTTGTTGAG GGAGGTAGGA ATTTTAGCTT TTCAGCTGTA 
GTAGTGGTAG GAGATGGGAA AGGTATAGTA GGACATGGAC TTGGAAAAGC ACAAGAAGTT 
ACCAATGCTA TTGCAAAAGG AATAGAAAAT GCAAAGAAAA ATCTTATTAA GGTTCCTATA 
CAAAAAGGTA CGGTACCACA CCGGGCTATA GGTAGATTTG GTGGAGGTGA AGTGCTAATT 
AAGCCAGCAG CTCCGGGTAC AGGTATTATT GCAGGTGGAG GTGCACGTGT TGTATTAGAA 
TGCGCAGGTA TCAATAATGT ACTTTCTAAA TTAAAGGGAT CTTCTAATCC TCATAATACT 
GTAAAGGCAA CTTTTCAAGC TTTATCTCAA ATGAGAGATC CTATTACTGT GGCAGCACAA 
AGAGGAATTA GCTTGGATAA ATTATTTAAT GGATAA 

 

Protein sequence

MMQLKKIIKP SELNLTEKVV AINRVTKVVE GGRNFSFSAV VVVGDGKGIV GHGLGKAQEV 
TNAIAKGIEN AKKNLIKVPI QKGTVPHRAI GRFGGGEVLI KPAAPGTGII AGGGARVVLE 
CAGINNVLSK LKGSSNPHNT VKATFQALSQ MRDPITVAAQ RGISLDKLFN G