| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1859 |
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| Symbol | xylF |
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| ID | 6363468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 2214722 |
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| End bp | 2215879 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642681066 |
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| Product | xylose ABC transporter periplasmic protein |
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| Protein accession | YP_001955802 |
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| Protein GI | 189440721 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000887855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTCA CTAAGAAGAT CGTCGCCGTG GTGGCAGGCG TTGCCATGTG CGCGGGCCTC
GCGGCCTGTG GTGGCAGCCG TAGCGGCCAG GCAACTGGCG GTGATGCCAA GATCGAAAAG
GGTGCCACTA TCGGCATTTC GATGCCGACC AAGTCCGAAG AGCGTTGGAA CAAGGACGGC
AACAACCTGA AGGCCAAGCT GGAGAAGGCC GGATACAAGG TCATCCTGTC TTTCGCCGAC
GATAAGCCGG CCCAGCAGAA CGCTGACATC GAGAACATGG TCAACAACGA CGCCAAGATC
GTCGTGGTCG CCTCCAAGGA TGGCACCGCA GTGGGCCCCG CCGTTGAGAA GGCCCGCGAT
GCAGGCGCCA AGGTCATCGC CTACGATCGA CTGATCATGA ACACCGACGC CGTCGACTAC
TACGCCACCT TCCAGCTGGA GCAGGTCGGC GTGCTCGAGG CCACGTGGCT CATTGACCAG
CTCAAGCTTA AGGATGGCGC CACCGGCCCG TTCAATATCG AGCTGTTCAC CGGTTCCCCG
GATGACAACA ACGCCAAGTA CTTCTTCAAG GGCGCTTGGG ATCTGCTGCA GCCGTACTTC
GAGAAGGGCG TGCTCGTCTC CCCGTCCCAG CACGGTCAGG GTGGCGTGAC CAAGGACTTC
ACCGTTGAGG ATTGGCAGAA GATCTCCGTG ATGAGCTGGA AGACCGAGCA GGCGCAGAAG
GACATGGAAT CCATCCTTGA CTCCACCTAC GCCCACGGCG AGAAGCTCGA CGCGGTCCTC
ACTCCGTACG ACGGCATCGC CCAGGGTGTG ATCAACGCCA TCGAATCCAA GCGTCCCGAC
ATGAAGCCGG GCACCGACTC CTGGCCGTAT ATCACCGGTC AGGACGCCAT GGAGATCGCA
GTTGCCAACA TCGCCAAGGA TAAGCAGGGC GAGACCGTGT TCAAGGACGT GAACAAGCTG
GCTGACGCCG TGTACGACAT GGTCGTCGAG ATCGCCGAGG GCAAGGAAGT CTCCGGCCTG
AACGGCAAGT TCAACAACAA CAACATCGAC GTCCCGTCCA AGCTGCTTGA CCCCCAGAAC
ATCACCAAGG ACAACCTCCA GGATCTGGTC ACGGCCAACT ACATCACCCA GGATCGCTTC
GACGAGCTGA CTAAGTAG
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| Protein sequence | MKFTKKIVAV VAGVAMCAGL AACGGSRSGQ ATGGDAKIEK GATIGISMPT KSEERWNKDG
NNLKAKLEKA GYKVILSFAD DKPAQQNADI ENMVNNDAKI VVVASKDGTA VGPAVEKARD
AGAKVIAYDR LIMNTDAVDY YATFQLEQVG VLEATWLIDQ LKLKDGATGP FNIELFTGSP
DDNNAKYFFK GAWDLLQPYF EKGVLVSPSQ HGQGGVTKDF TVEDWQKISV MSWKTEQAQK
DMESILDSTY AHGEKLDAVL TPYDGIAQGV INAIESKRPD MKPGTDSWPY ITGQDAMEIA
VANIAKDKQG ETVFKDVNKL ADAVYDMVVE IAEGKEVSGL NGKFNNNNID VPSKLLDPQN
ITKDNLQDLV TANYITQDRF DELTK
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