Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_1859 |
Symbol | xylF |
ID | 6363468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 2214722 |
End bp | 2215879 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642681066 |
Product | xylose ABC transporter periplasmic protein |
Protein accession | YP_001955802 |
Protein GI | 189440721 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000887855 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTCA CTAAGAAGAT CGTCGCCGTG GTGGCAGGCG TTGCCATGTG CGCGGGCCTC GCGGCCTGTG GTGGCAGCCG TAGCGGCCAG GCAACTGGCG GTGATGCCAA GATCGAAAAG GGTGCCACTA TCGGCATTTC GATGCCGACC AAGTCCGAAG AGCGTTGGAA CAAGGACGGC AACAACCTGA AGGCCAAGCT GGAGAAGGCC GGATACAAGG TCATCCTGTC TTTCGCCGAC GATAAGCCGG CCCAGCAGAA CGCTGACATC GAGAACATGG TCAACAACGA CGCCAAGATC GTCGTGGTCG CCTCCAAGGA TGGCACCGCA GTGGGCCCCG CCGTTGAGAA GGCCCGCGAT GCAGGCGCCA AGGTCATCGC CTACGATCGA CTGATCATGA ACACCGACGC CGTCGACTAC TACGCCACCT TCCAGCTGGA GCAGGTCGGC GTGCTCGAGG CCACGTGGCT CATTGACCAG CTCAAGCTTA AGGATGGCGC CACCGGCCCG TTCAATATCG AGCTGTTCAC CGGTTCCCCG GATGACAACA ACGCCAAGTA CTTCTTCAAG GGCGCTTGGG ATCTGCTGCA GCCGTACTTC GAGAAGGGCG TGCTCGTCTC CCCGTCCCAG CACGGTCAGG GTGGCGTGAC CAAGGACTTC ACCGTTGAGG ATTGGCAGAA GATCTCCGTG ATGAGCTGGA AGACCGAGCA GGCGCAGAAG GACATGGAAT CCATCCTTGA CTCCACCTAC GCCCACGGCG AGAAGCTCGA CGCGGTCCTC ACTCCGTACG ACGGCATCGC CCAGGGTGTG ATCAACGCCA TCGAATCCAA GCGTCCCGAC ATGAAGCCGG GCACCGACTC CTGGCCGTAT ATCACCGGTC AGGACGCCAT GGAGATCGCA GTTGCCAACA TCGCCAAGGA TAAGCAGGGC GAGACCGTGT TCAAGGACGT GAACAAGCTG GCTGACGCCG TGTACGACAT GGTCGTCGAG ATCGCCGAGG GCAAGGAAGT CTCCGGCCTG AACGGCAAGT TCAACAACAA CAACATCGAC GTCCCGTCCA AGCTGCTTGA CCCCCAGAAC ATCACCAAGG ACAACCTCCA GGATCTGGTC ACGGCCAACT ACATCACCCA GGATCGCTTC GACGAGCTGA CTAAGTAG
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Protein sequence | MKFTKKIVAV VAGVAMCAGL AACGGSRSGQ ATGGDAKIEK GATIGISMPT KSEERWNKDG NNLKAKLEKA GYKVILSFAD DKPAQQNADI ENMVNNDAKI VVVASKDGTA VGPAVEKARD AGAKVIAYDR LIMNTDAVDY YATFQLEQVG VLEATWLIDQ LKLKDGATGP FNIELFTGSP DDNNAKYFFK GAWDLLQPYF EKGVLVSPSQ HGQGGVTKDF TVEDWQKISV MSWKTEQAQK DMESILDSTY AHGEKLDAVL TPYDGIAQGV INAIESKRPD MKPGTDSWPY ITGQDAMEIA VANIAKDKQG ETVFKDVNKL ADAVYDMVVE IAEGKEVSGL NGKFNNNNID VPSKLLDPQN ITKDNLQDLV TANYITQDRF DELTK
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