| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1084 |
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| Symbol | |
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| ID | 6364606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 1272982 |
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| End bp | 1274628 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642680255 |
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| Product | collagenase |
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| Protein accession | YP_001955028 |
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| Protein GI | 189439947 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.795762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCC CCACCCGCAA AAAGCCCGAA GTGTTGTCCC CGGCCGGCAA CCTGAGGGGC
CTGAAAACCG CGGTCGATTA TGGTGCCGAT GCCGTCTACT GCGGCGGCAA AGCCTTCGGC
ATGCGATCGG CCCCCAAAAA CCTTAGCCTT GAGGATTTCG AGGAAGGATC GCGCTACGCC
CATGAACGCG GCGCTCGCGT GTACGTGACC TGCAACGTGC TGCCGCGCAA CAACGAGATC
GAAGCCATGC ACGAGTACGT CGGCCAGCTC AAAGACACCG GCGTGGACGC GCTGATCGTC
TCCGATATTG GCGTGATGAT GATGGCCCGT CAGGTGGCTC CGAATCTGGA ACTGCACGTC
TCCACCCAGG CCGGCGTGAC TAATTATCAG GCTGCGAACG CCTTCTACGA GCTTGGTGCT
CGCCGTGTGG TGTTGGCCCG CGAGATGGAC TTGCAGGCCG TGCGTGATAT TCGCGCCAAC
ATTCCCGATG ACCTCGACAT CGAATGCTTC GTCCACGGTG CTATGTGCAT GGCCTTCTCC
GGCCGCTGCC TGTTCTCCAA CTATCTGACC GGCCGCGATG GCAATCACGG CGAATGCGCC
CAGCCATGCC GCTGGAAGTA TTCGATCGTG GAAGAGAAGC GCCCCGGCCA GTACTTCCCG
ATCGAGCAGA CCGAGAACGG CGCCTATCTG TTCAATTCGC AGGACATGAA TATGCTGGGA
CACTTGGATG ATTTGATTGA CTCCGGTGCC ACCAGCCTCA AAATCGAAGG CCGCGCGAAA
AGCGCCTACT ATATCGCCGC CATGACCAAC GCCTACAAAA CCGCGGTTAA TGAATACATG
ATTCAACGCG GTTTTGAAGA CGCTGATGGC AATGTTTTGA AGCCTTTCCA TGACCGTGTG
ATTCGCCCGG GCGACCCCGA TTTTGGCCAA GGAACCGAAG ATCAAGTGAT GCGCAATGCT
GATGCCGCGT TCGCCGGTGT GGCCGATGAG GGATATGACC GTGGCTCTGA TACTGCGGTT
GCCGATTCGG TCACCGGCTC GGTTGCCGCA GAACGTGACC GCGTGACGGT TGCTGATGCC
GTCGACTCAA CTGCCTCTGG TACGCCGGCC GGCACCGCCG TCGAACCCGA CGGCATGAGC
TCTCACGCCC GTTCCACGCG CCGCAAGTCC AACACCGCGG TCGAACAGAT TGAGACCGAT
TGGAAACATG CGGCCGTTCG CCCGGCCCCA CACGTCGAAC TGCCCGAATG GCTGCTCGAG
GAAACCGACA AGGTGGCCCA CCGCGACTAC TCCACCGGCT TCTATTACCC GGAGCACAAG
GTCACACAGA ACACCGACCG CTCCGCCTAC TTCCGCTCAT GGCTGGTAGT GGGCGAAGTG
CTGAGCTGGA GCGCGGACGA AGACGGACGT GTCACGCTGA TGAGCCGTAA CAAGATTGAG
CCCGGTCAAC AGGTCGAATT CCTGCTGCCT GGCGAGAGAC CATTGGTCTT TACCGTGCCG
GAAACCGGCC TGCGCGATGC CGATGGCGCG CCAGTACCCG CCATCAATAA TCCGGCGCAC
GTGTTCTCGA TGCCCTGCCC GCACCAGGTG CCCATCAACG CCGCCATCCG CTCGCGCACC
AAAAAGCCCA CCCTCAAAGC CGAATAA
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| Protein sequence | MNLPTRKKPE VLSPAGNLRG LKTAVDYGAD AVYCGGKAFG MRSAPKNLSL EDFEEGSRYA
HERGARVYVT CNVLPRNNEI EAMHEYVGQL KDTGVDALIV SDIGVMMMAR QVAPNLELHV
STQAGVTNYQ AANAFYELGA RRVVLAREMD LQAVRDIRAN IPDDLDIECF VHGAMCMAFS
GRCLFSNYLT GRDGNHGECA QPCRWKYSIV EEKRPGQYFP IEQTENGAYL FNSQDMNMLG
HLDDLIDSGA TSLKIEGRAK SAYYIAAMTN AYKTAVNEYM IQRGFEDADG NVLKPFHDRV
IRPGDPDFGQ GTEDQVMRNA DAAFAGVADE GYDRGSDTAV ADSVTGSVAA ERDRVTVADA
VDSTASGTPA GTAVEPDGMS SHARSTRRKS NTAVEQIETD WKHAAVRPAP HVELPEWLLE
ETDKVAHRDY STGFYYPEHK VTQNTDRSAY FRSWLVVGEV LSWSADEDGR VTLMSRNKIE
PGQQVEFLLP GERPLVFTVP ETGLRDADGA PVPAINNPAH VFSMPCPHQV PINAAIRSRT
KKPTLKAE
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