| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0965 |
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| Symbol | rpoB |
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| ID | 6363194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 1127781 |
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| End bp | 1131344 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642680133 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001954909 |
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| Protein GI | 189439828 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTACTG AGTCTACGAC GAACACCACC ACCATCATCG CACGCGCCGA CCAGCATGAT
ATTGACCTGC ACAAGGCGTC GGATCGCGTG AACTTCGGTT CCATCAAGGA ACCCATCGAT
GTGCCCTACC TGCTGGGCGT GCAGACCGAC AGCTTCGATT GGCTGATCGG CAACGAACGC
TGGAAGGCGC GCGTCGAGGA GGACGAAAAG AACGGCACTA ACACCGTGGC CCACACCTCC
GGCCTCGATG AGGTCTTCAA CGAGATCTCT CCGATCGAGA ACTTCGCTCA GACCATGAGC
CTGACCTTCT CCGATCCGTA CTTCGAAGAG CCGCGTCACA CCGTGCAGGA ATGCAAGGAG
AAGGATTACA CCTACTCCGC ACCGCTGTAC GTGAACGCCG AGTTCGAGAA CGGCGACACC
GGCGAGATCA AGTCCCAGAC CGTGTTCATG GGCGACTTCC CGCTGCAGAC TCCGCACGGC
ACCTTTATCA TCGGCGGCAC CGAGCGAGTC ATCGTCTCCC AGCTCGTGCG CTCCCCGGGC
GTCTACTTCG ATCGTCAGCA GGACCGCACC TCCGATAAGG AAGTCTTCGG CGCGAAGATC
ATCCCGAGCC GTGGTGCATG GCTCGAGTTC GAGATCGATA AGAAAGACCA GCCGCAGGTG
CGCGTGGACC GCAAGCGCAA GCAGTCCGCC ATCGTGTTCC TCATGGCCAT CGGCATGACC
AAGTCCGAGA TCGCCCAGGC ATTCAAGGAC TACCCGCTGG TGCTCGACGC ACTCGAGAAG
GAAACCCTCG GGACCCAGGA CGAGGCACTC GTTGACCTCT ACCGCAAGAT TCGTCCGGCC
GACACCCCAA CCCCCGAGGC CGGCAAGAAC CTGCTGGACT CCTTCTACTT CAACACCAAG
CGCTACGATC TGGCCCGTGT CGGCCGCTAC AAGATCAACC GCAAGCTGGG TGTCGAGGCC
GATTTCAACG ATCGTTCCCT CCACCAGGAA GACATCATCG CCACGATCAA GTACCTGGTG
GCCCTGCACG ACGGTGCGGC GACCTTCCCG GGCAAGCGCA ACGGCGAAGA CGTTGACCTG
CGCGTGGACG TCGACGATAT CGACCACTTC GGCAACCGTC GTATCCGCCA GGTCGGCGAG
CTGATCCAGA ACCAGCTGCG TACCGGTCTG AGCCGTATGG AGCGCGTGGT GCGCGAGCGT
ATGACCACTC AGGACGCCGA GGCCATCACC CCACAGTCCC TGATCAACAT CCGCCCGGTG
AACGCCACCA TCAAGGAGTT CTTCGGCACT TCCCAGCTCT CCCAGTTCAT GGACCAGAAC
AACCCGCTGT CCGGTGTGAC GAACAAGCGT CGTCTCTCCG CACTGGGCCC CGGCGGTCTG
TCCCGCGACC GCGCCTCCAT GGAGGTGCGC GACGTGCACC CGTCCCACTT CGGCCGTATG
TGCCCGATCG AGTCTCCTGA AGGCCCGAAC ATCGGTCTGA TCGGCTCCCT GGCAACCTTC
GGCCGCGTCA ACCCGTTCGG CTTCATCGAG ACCCCGTACC GCAAGGTCGT CAACGGCCAC
GTGACCGACG AGGTCGAGTA CATGACCGCT GACCGCGATC TTGACCACGT CATCGCCCAG
GCCAACCAGG AGCTCGACGA GAACGGCAAC TTCGTGCAGA AGTCCGCCCT TGCCCGAGTC
GGCGAAGAAG AGGCGGTCGA TGTGCCGGTG AGCTCCGTGG ACTACATGGA CGTCTCCCCG
CGCCAGATGG TCTCCCTCGG CGCCTCCCTG ATTCCGTTCC TGGAGCATGA TGAGGGCCAC
CGTGCACTGA TGGGTACCAA CATGCAGCGT CAGGCCGTGC CGCTGATCGA ATCCGAGCGC
CCGCTGGTGG GCACCGGCTC CGAATGGCGC GCCGCCAACG ACTCCGGCGA CGTCATCAAG
TCCGAGAAGG ACGGTGTGGT CACCTACGTG TCCGCCGACC TGATCCGCGT GATGAACGAC
GACGGCACCA CCAGCTCCTA CAAGCTGGCC AAGTTCCAGC GCTCCAACCA GACCACCTGC
TACAACCAGC GCCCGATCGT CCACGACGGC GAGCGTGTGG AAGCCGGCTC GGTTATGGCT
GACGGCCCCG CCATCCAGAA CGGCGACCTG GCCCTGGGCA AGAACCTGCT CATCGCCTTC
ATGCCGTGGA ACGGCTACAA CTACGAGGAT GCTGTGATCA TCTCCCAGCG CCTCGTGCAG
GACGACACCC TCTCCTCCAT CCACATCGAG GAGTACGAGA TTGACGCCCG CGAAACCAAG
CTGGGTGCCG AAGAGATCAC CCGCGACCTG CCGAACGTCG GCGAGGACGC CGTGGCCAAC
CTCGACGAGC GCGGCATCAT CCGCATCGGC GCCGAGGTCG AGGCCGGCGA CATCCTGGTC
GGTAAGGTCA CCCCGAAGGG TGAGACCGAG CTGACCCCGG AGGAGCGCCT GCTGCGCGCC
ATCTTCGGCG AGAAGTCCCG CGAGGTGCGT GACACCTCCC TGCGCGTGCC CCACGGCGAG
ACCGGTACCG TCATCGGCGT CAAGGAAATC ACCCGTGAGG ATGCCGAGGA GGACGGCGAC
GAGCTGCCCA ACGGCGTCAA CCAGATGATC CGCGTCTACA TCGCCCAGCA CCGTAAGATC
ACGGTGGGCG ACAAGCTCTC CGGCCGCCAC GGCAACAAGG GCTGCATCTC CCGCATCCTG
CCGGAAGAGG ACATGCCGTT CCTGGCTGAC GGTACTCCGG TCGACATCAT GCTGAACCCG
CTGGGTGTGC CTTCCCGAAT GAACCTTGGC CAGGTGCTCG AACTGCACCT CGGCTGGATT
GCTCACTCCG GTTGGGACAT CTCTTTGGAT CCGAATCTGG AAGCCGAGTG GAAGAAGCTG
ATTCCGTCCG GTGCCGAGAA GGCCGAGCCG AACACCCCGG TCGCCACCCC GGTGTTCGAC
GGTGTCAAGC CTGAGGTCCT GAAGGGCCTG CTGTCCACCA CGCTGCCGAA CCGCGACGGC
GACCGTCTGG TCGGCCCCGA CGGCAAGGCC ACCCTGTTCG ATGGCCGTAC CGGTGAACCG
TACACCAAGC CGATTTCCGT TGGCTACATG TACATGCTGA AGCTGCACCA CCTGGTCGAC
GACAAGATTC ACGCTCGTTC CACCGGCCCG TACTCCATGA TCACCCAGCA GCCGCTCGGT
GGTAAGGCCC AGTTCGGTGG CCAGCGCTTC GGCGAGATGG AGGTGTGGGC CCTTGAGGCC
TACGGCGCCG CCTACACGCT GCACGAGATG ATGACCACCA AGTCCGATGA CGTCGACGGC
CGTGTGCGTG TCTATGGTGC CATCGTCAAG GGCGATAACC TGCCGCCGGC AGGCATCCCC
GAGTCGTTCA AGGTGCTCCT GAAGGAAATG CAGTCCCTGT CCCTGAACGT CGAAGTGCTC
AACGCCGAAG GCGTGGCCAT CGACATGAAG GATGAGGATG ACGATCCGGC CAGCTCCGCT
GACGACCTCG GCTTCAACAT CGGCGCCCGC CCCGACGCGG CCGCCAAGGA AGACCAGAAG
GCCGAAGAGC CCGAATACCA GTGA
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| Protein sequence | MATESTTNTT TIIARADQHD IDLHKASDRV NFGSIKEPID VPYLLGVQTD SFDWLIGNER
WKARVEEDEK NGTNTVAHTS GLDEVFNEIS PIENFAQTMS LTFSDPYFEE PRHTVQECKE
KDYTYSAPLY VNAEFENGDT GEIKSQTVFM GDFPLQTPHG TFIIGGTERV IVSQLVRSPG
VYFDRQQDRT SDKEVFGAKI IPSRGAWLEF EIDKKDQPQV RVDRKRKQSA IVFLMAIGMT
KSEIAQAFKD YPLVLDALEK ETLGTQDEAL VDLYRKIRPA DTPTPEAGKN LLDSFYFNTK
RYDLARVGRY KINRKLGVEA DFNDRSLHQE DIIATIKYLV ALHDGAATFP GKRNGEDVDL
RVDVDDIDHF GNRRIRQVGE LIQNQLRTGL SRMERVVRER MTTQDAEAIT PQSLINIRPV
NATIKEFFGT SQLSQFMDQN NPLSGVTNKR RLSALGPGGL SRDRASMEVR DVHPSHFGRM
CPIESPEGPN IGLIGSLATF GRVNPFGFIE TPYRKVVNGH VTDEVEYMTA DRDLDHVIAQ
ANQELDENGN FVQKSALARV GEEEAVDVPV SSVDYMDVSP RQMVSLGASL IPFLEHDEGH
RALMGTNMQR QAVPLIESER PLVGTGSEWR AANDSGDVIK SEKDGVVTYV SADLIRVMND
DGTTSSYKLA KFQRSNQTTC YNQRPIVHDG ERVEAGSVMA DGPAIQNGDL ALGKNLLIAF
MPWNGYNYED AVIISQRLVQ DDTLSSIHIE EYEIDARETK LGAEEITRDL PNVGEDAVAN
LDERGIIRIG AEVEAGDILV GKVTPKGETE LTPEERLLRA IFGEKSREVR DTSLRVPHGE
TGTVIGVKEI TREDAEEDGD ELPNGVNQMI RVYIAQHRKI TVGDKLSGRH GNKGCISRIL
PEEDMPFLAD GTPVDIMLNP LGVPSRMNLG QVLELHLGWI AHSGWDISLD PNLEAEWKKL
IPSGAEKAEP NTPVATPVFD GVKPEVLKGL LSTTLPNRDG DRLVGPDGKA TLFDGRTGEP
YTKPISVGYM YMLKLHHLVD DKIHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA
YGAAYTLHEM MTTKSDDVDG RVRVYGAIVK GDNLPPAGIP ESFKVLLKEM QSLSLNVEVL
NAEGVAIDMK DEDDDPASSA DDLGFNIGAR PDAAAKEDQK AEEPEYQ
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