| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0777 |
|---|
| Symbol | mfd |
|---|
| ID | 6362674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 890921 |
|---|
| End bp | 894505 |
|---|
| Gene Length | 3585 bp |
|---|
| Protein Length | 1194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642679943 |
|---|
| Product | transcription-repair coupling factor (superfamily II helicase) |
|---|
| Protein accession | YP_001954721 |
|---|
| Protein GI | 189439640 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGTG AGGCGACGCA CCCGGACCTG ATCAACGGCT CACTGGTAGG CATCCTGTCT
GAGCTGGAAC AGGACAAGAC CTTCCTGAAG CTCGCCGCCG GCGACATCGA GGCTTCGGAC
GACGTCGACA ACTCCGTCCT GGCCGGCATC CCCGAAGGTT TGCGCCCGGC TTTGGCCGCC
GCCATCGGGC AGGGTGTGGC CGGCAAACCC GGCAAGCCGG TCGTGCTGGT CGTGGCCTCC
GGCCGCGAAG CCGAAGAGAC CGTGGGCTCG CTGCGCTCCT GGTATGATGG CGACCCGAAC
GACATCGCCC AGCTCGAAGC CTGGGAAACC CTGCCGCACG AGCGTCTGAG CCCGCGCGCG
GACACCGTGG CCAGCCGCAT GGCCGTGTTC CGCAGACTCA AGCATCCGAG CGATACCGAT
TCGATGTTCG GCCCGATTCG CATTCTCGTC ATGCCGATCC GCTCGCTCAT CCAGCCAGTC
GTCCAAGGAC TGGGCGATGT CGAGCCGCTC GTGTTCACCG TGGGGGAGGA CCTGCCCCTC
GACGAAGCCG CCAAACGTCT GATCGAAAAC GCCTATACGC GCGTGGACCT GGTCATGGAC
CGTGGCGAGT TCGCGGTGCG CGGAGGCATT CTTGACGTAT TCCCGCCCAC CGCACCGCAC
CCGGTGCGTA TCGAATTCTT CGGCGACGAA ATTGACACCA TCAAGGAATT CCACGCCTCC
GACCAGCGTA CCTACGGCGA CGGCCTCAAG ACCATTTGGG CCACCGCATG CCGTGAACTG
CAGCTGACCG ACGCCGTGCG CACCCGCGCC AAAGCCTTGG TCGGTTCGAT TCCCAATGCT
GAGGACATGC TCGAATCCAT CGCCAACGCC ATTCCGGTCG AAGGCATGGA ATCCCTGATG
CCCGCACTCG TGGACCATCT GGAACCGGTG GGCTCCATGC TTCCCAAGCA CGCCGTGATC
CTCCTGAGCG ACCCGGAGAA ACTACGCCGC TCCGCCGAAG ACTTGGCAAA AACCGCGAAC
GAGTTCCTAG CCGCCAGCTG GCATGTGGCC GCCTCCGGCC ACGGCGCCGG CGCGCCCATC
AGCTTCGACG AAGCCAGCTT CCTCGACTAT GCGGAAACCA TCAGCTCCCT CGAATACTCC
GAACATCCGG TGATTCGCCT CACCAGTTTC GGCGTGGACA CCACGTTGAC CGGCCATGTG
CAGCTCGACG CCCAGAACCC GGCCGAATTC CGAGGGGATG AGGCCAAGGC CTCCCAAGGC
ATCGAAGGCC TGCTCGATGC CGGCTTCCAC GTCACCATCA CCGCCGCTGC GGCCGGCACC
TTGGCTAGGC TCAAGCGTGC GATCAACACT ACCGGCATCG CCAATTTCGA CGTCATCCGC
TCTCAGGCCA TCGACGGCTT CGTGGACAAA GCCGCCAAAA TCGCCCTGCT CACCGAACGC
GACCTGACCG GCCGCACTTC AGCCGTGGCC GTGGCCAAAA CGCCGAAACG CCGGCGCAAG
GCCATCGACT TGGTGGAGCT CAAAAAAGGC GATTACGTGG TGCACGAGCA GCACGGCATT
GGCCGGTTCA TCGAAATGCG TCAGCGCACC ATCGGCACCG GCGCCAACAA AACCACTCGC
GAATACCTGG TCATCGAATA TGCGCCTTCC AAGCGCGGCG CCCCGGCGGA CAAACTGTTC
ATCCCCACCG ACCAGCTCGA CCAGGTCAGC AAATACATCG GCGCCGAAGC CCCCAAGCTC
AACAAGCTCG GCGGCTCCGA CTGGGCGGCC ACCAAGGCCA AGGCCCGCAA GCACGTCCAC
GAGATCGCCG ACGACCTGAT CAAGCTGTAC TCCGCCCGCC AGCGCGCCAA GGGCTTCGCG
TTCAGCCCGG ACACCCCATG GCAGAAAGAG CTGGAAGACG CCTTCCCCTA TCAGGAAACC
GCCGACCAGC TCACCACCAT CGACGAAGTT AAATCCGACA TGGAAAAGCC CGTGCCGATG
GACCGCCTCA TCTGCGGCGA CGTGGGCTTC GGCAAAACCG AAATCGCACT GCGTGCCGCC
TTCAAGGCCG TGCAGGACGG CAAGCAGGTG GCCGTGCTCG TGCCCACCAC GCTGCTTGTC
CAGCAGCATT ACGAGACGTT CAGCGAACGA TTCGAGGGTT TCCCGGTCAA TGTGGCGGCC
ATGAGCCGAT TCCAGACCAC CAAAGAGATC AACGAGACCA TCGAGGGGCT GGAAACCGGC
ACGGTGGACG TGGTCATCGG CACGCACAAG CTGCTGAACC CGAAAATCAA GTTCAAGGAT
CTGGGACTCG TCATCATCGA TGAGGAGCAG CGTTTCGGCG TGGAACACAA GGAGACGCTG
AAAGCCCTGC GCACCAACGT GGACGTGCTG TCCCTGTCTG CCACGCCTAT CCCGCGCACG
CTGGAAATGG CCGTGACCGG CATTCGCGAG ATGTCCACGC TCGCCACCCC GCCCGAAGAC
CGGTTGCCGG TGCTGACCTA TGTGGGCGCC TACGAGGATG CGCAGGTCAC CGCAGCCGTA
CGCCGCGAAC TGCTGCGAGG CGGCCAGGTG TTCTATGTCC ACAATCGTGT GCAGGACATC
TCGTCCATCG CCGACAAGAT TCACACGCTG GTGCCCGAGG CGCACGTCGG CATCGCCCAC
GGCAAGATGG GGGAGAAGCA GCTCGACCAG ATCATCCGCG ACTTCTGGCA TCGCGACATA
GACGTGCTCG TGTGTACCAC AATCATCGAG ACCGGTCTTG ATATCTCCAA TGCGAACACG
CTGATCGTCG ACCATGCCGA CCGTTTCGGC TTGAGCCAGC TCCATCAGCT GCGTGGCCGC
GTCGGCCGCG GCCGCGAGCG CGCGTACGCC TACTTCCTGT ACGACCCGTC CAAGCCGATG
ACCGAGCAGT CCCATGACCG GCTCGCCACC ATCGCGCAGA ACACGGCGCT CGGCTCCGGT
TTCGACGTGG CCATGAAGGA CTTGGAATTG CGCGGCACCG GTAACCTTCT GGGCGACGAG
CAGTCCGGCC ATATCGAGGG CGTGGGCTTC GACCTGTACG TACGCATGGT GTCCGAAGCC
GTGGAAAAGT ACAAGGAGCC CGAAGAGAAC GTCGAGCCGG TGGCCGTGTC CATCGACCTG
CCCATCGAAG CGTCGATTCC GATCGAGTAC ATTGATTCGG ACAAGCTGCG TCTGGAAGCG
TACCGCAAGC TCGCCTCCGC CCGCAACGAG GCCGATCTGA AGGATTTGGA AGAGGAACTT
ACCGACCGTT ACGGCAAGCC GCCGGTCGAA TTCGAGACCC TGTTCGACGT GGCCCGTCTG
AAGTTCAAGG CCCGCAAGCT CGGCATTTCG GAGATTCTCG CGCAATCCAA CCGCGTGCGC
ATCGGTCGCA TCGACCCGCC CGAATCCATC CAGATGCGTA TGGGCCGTAT TTACAAAGGC
ACCCAATACC GCCCGGTCAC CCACCAACTC ATCGTCCCCA CCCCGTTCAC CGGCTCCCTG
GGCCAAGGTC CCATGAGCTC CGACCAGGTA GTCCTCTGGA CCAACCAGTT ACTTGATGAT
TTGGCATGGA CCCCGTCGTC AAGCAAACGG CAGAGCCGTT TGTAG
|
|---|
| Protein sequence | MAGEATHPDL INGSLVGILS ELEQDKTFLK LAAGDIEASD DVDNSVLAGI PEGLRPALAA
AIGQGVAGKP GKPVVLVVAS GREAEETVGS LRSWYDGDPN DIAQLEAWET LPHERLSPRA
DTVASRMAVF RRLKHPSDTD SMFGPIRILV MPIRSLIQPV VQGLGDVEPL VFTVGEDLPL
DEAAKRLIEN AYTRVDLVMD RGEFAVRGGI LDVFPPTAPH PVRIEFFGDE IDTIKEFHAS
DQRTYGDGLK TIWATACREL QLTDAVRTRA KALVGSIPNA EDMLESIANA IPVEGMESLM
PALVDHLEPV GSMLPKHAVI LLSDPEKLRR SAEDLAKTAN EFLAASWHVA ASGHGAGAPI
SFDEASFLDY AETISSLEYS EHPVIRLTSF GVDTTLTGHV QLDAQNPAEF RGDEAKASQG
IEGLLDAGFH VTITAAAAGT LARLKRAINT TGIANFDVIR SQAIDGFVDK AAKIALLTER
DLTGRTSAVA VAKTPKRRRK AIDLVELKKG DYVVHEQHGI GRFIEMRQRT IGTGANKTTR
EYLVIEYAPS KRGAPADKLF IPTDQLDQVS KYIGAEAPKL NKLGGSDWAA TKAKARKHVH
EIADDLIKLY SARQRAKGFA FSPDTPWQKE LEDAFPYQET ADQLTTIDEV KSDMEKPVPM
DRLICGDVGF GKTEIALRAA FKAVQDGKQV AVLVPTTLLV QQHYETFSER FEGFPVNVAA
MSRFQTTKEI NETIEGLETG TVDVVIGTHK LLNPKIKFKD LGLVIIDEEQ RFGVEHKETL
KALRTNVDVL SLSATPIPRT LEMAVTGIRE MSTLATPPED RLPVLTYVGA YEDAQVTAAV
RRELLRGGQV FYVHNRVQDI SSIADKIHTL VPEAHVGIAH GKMGEKQLDQ IIRDFWHRDI
DVLVCTTIIE TGLDISNANT LIVDHADRFG LSQLHQLRGR VGRGRERAYA YFLYDPSKPM
TEQSHDRLAT IAQNTALGSG FDVAMKDLEL RGTGNLLGDE QSGHIEGVGF DLYVRMVSEA
VEKYKEPEEN VEPVAVSIDL PIEASIPIEY IDSDKLRLEA YRKLASARNE ADLKDLEEEL
TDRYGKPPVE FETLFDVARL KFKARKLGIS EILAQSNRVR IGRIDPPESI QMRMGRIYKG
TQYRPVTHQL IVPTPFTGSL GQGPMSSDQV VLWTNQLLDD LAWTPSSSKR QSRL
|
|---|
| |