| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0297 |
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| Symbol | rpoD |
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| ID | 6363828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 368089 |
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| End bp | 369513 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642679445 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001954241 |
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| Protein GI | 189439160 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCACGA AGGAAACGAC GGCAACCAAG CAGACAGCCG AGTCCAGCGA GGAGACCGAG
ACCAAGAAGA AGGCCAGCTC TACGACCACC GCACGCAAGA CTTCCGCCAA GAAGTCCAAG
TCCGCAGAGC CCTCGAAAAA GACCACGCGC AAGTCCGCTG CGAAGAAAAC CGCGAAGAAG
GCCAAGGACG ATGAGCTCGT CAAAGACGAG GACACTCAGG TCGATGACGA GCTTGATGAC
GATGCCGAGG TCAACGACGA CGATTTGGAC GTTGACGACC TCGACGAGGA TCTTGACGAC
GTTGACGAAG ACGATGCCGA CGACGAAGAC CTCGATGAGG ACGATGCCGA CGACGATGAT
GTGGAAGACG ACGAGGACGA GGAAGAAGCC AAGTCCAAGG CACCCGAGCA GCCCAAGGAA
AAGGGTGCCT ACGTGGTCTC CGACACGGAT GATGAGGAAG AAAACATCAT CCCCTCGGGC
AATCCGAAGC GTCGTGTGAT TGCGGCCGGC GCAACCGCCG ACCCGGTCAA GGACTACCTG
AAGCAGATCG GCCGTGTGAG CCTGCTGAAC GCCGAGCAGG AAGTCGACCT GTCCGAGCGC
ATCGAGGCCG GCCTGTACGC CCAGCACCTG CTCGACACCG AAAGCGAAGG CATGGAGTTC
AAGCGCAAGC GTGAACTCAA GTGGGCCGCC GCCGACGGCA AGAAGGCTAA GGACCATCTG
CTGGAAGCCA ACCTACGACT TGTGGTCTCG CTCGCCAAGC GCTACACGGG TCGCGGCATG
CTCTTCCTTG ATTTGATCCA GGAAGGCAAC CTTGGTCTGA TTCGTGCCGT CGAGAAGTTC
GACTGGAAGA AGGGCTTCAA GTTCTCCACC TACGCCACGT GGTGGATTCG TCAGGCCATC
ACCCGTGCCA TGGCCGATCA GGCCCGCACC ATTCGCGTGC CTGTGCACAT GGTCGAAGTG
ATTAACAAGC TGTCCCGTGT ACAGCGCCAG ATGCTGCAGG ATCTGGGGCG TGAACCTACG
CCGGACGAGC TGGCCCGCGA GCTGGATATG CCGGTTGAGA AGGTGCAGGA AGTGCAGAAG
TACGGCCGCG AGCCGATTTC CCTGCACACC CCGCTTGGCG AGGATGGCGA TTCCGAGTTC
GGTGACCTCA TTGAGGATAC CGACGCCATC GCTCCGTCCG ACGCCGTGGC CTTCTCCCTG
CTGCAGGAAC AGTTCAAGCA GGTGCTGGAA ACCCTGTCTC CGCGTGAGGC CGGCGTCATC
AAGATGCGCT ATGGCCTGGA AGACGGCCAG CCGAAGACGC TGGACGACAT CGGCCGTGTG
TATGGCGTGA CCCGTGAACG CATCCGTCAG ATCGAGTCCA AGACCATGTC CAAGCTGCGC
CACCCATCCC GTTCGCAGAC CCTGCGCGAC TTCCTGGATC AATGA
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| Protein sequence | MATKETTATK QTAESSEETE TKKKASSTTT ARKTSAKKSK SAEPSKKTTR KSAAKKTAKK
AKDDELVKDE DTQVDDELDD DAEVNDDDLD VDDLDEDLDD VDEDDADDED LDEDDADDDD
VEDDEDEEEA KSKAPEQPKE KGAYVVSDTD DEEENIIPSG NPKRRVIAAG ATADPVKDYL
KQIGRVSLLN AEQEVDLSER IEAGLYAQHL LDTESEGMEF KRKRELKWAA ADGKKAKDHL
LEANLRLVVS LAKRYTGRGM LFLDLIQEGN LGLIRAVEKF DWKKGFKFST YATWWIRQAI
TRAMADQART IRVPVHMVEV INKLSRVQRQ MLQDLGREPT PDELARELDM PVEKVQEVQK
YGREPISLHT PLGEDGDSEF GDLIEDTDAI APSDAVAFSL LQEQFKQVLE TLSPREAGVI
KMRYGLEDGQ PKTLDDIGRV YGVTRERIRQ IESKTMSKLR HPSRSQTLRD FLDQ
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