| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0066 |
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| Symbol | lig |
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| ID | 6364427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 84662 |
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| End bp | 87424 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642679205 |
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| Product | NAD-dependent DNA ligase |
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| Protein accession | YP_001954010 |
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| Protein GI | 189438929 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA ACGAACAACT GGCATGGGAT TTCGACGATG GGGATGTGGC CGCGGTCCGG
CCTGATACCG GTATTGCACG TTTTGCCCCT GGCTCCGAAC AATGGATAGC CGCACTGCAG
CCCACTGACG ACGACGCGAT ACGCCTCGAC CGTTTCGACG TGAACATGAT GACCGCTGAG
GCCGCCGCCC GCCTGTGGGC TCGCGTGGCC GCATGGGTGG AATCCGATCA GATCGCCTAC
TACATCGACG ACTCACCCGT CAGCTCCGAC GCCGCCTACG ACGCGCGCAT GCGTTGCCTC
GAACGACTCG AAGCGGCGTT CCCCTCACTG GACAATCCGC AGTCGCCCAC CCATCGCGTC
GGCGGCTCCT TCTCCAACGA CTTCACCTCC GTGCGCCACC CCAGCCGCAT GATGAGCCTT
GACGACGTCT TCTCCATCGA AGAACTCAAG GATTGGTACG ACTCGGTGAT TCGCGACCTC
GATTGGCCTG AATCCAAGCC CCTGCCCATG AGCTGCGAGG TCAAAATCGA CGGCCTCGCC
CTGAACCTCA TCTATCGCAA CGGCGTGCTT GAACAGGGCC TGACGCGCGG CGACGGCGTT
ACAGGCGAAG ACATCACCCT GAATGTGCGA ACCATCGGCT CCATTCCCGC CAACCTCGGC
GGCCCCAAGG AAGACGTTCC GGACTTCGTG GAAATCCGAG GCGAAGTGTT CATGCGTTGG
GATGATTTCC ACACCCTGAA CAACGAGCAG GAGGACGCCG GACGAGCGCC CTTCGCCAAC
CCACGCAACG CCGCCGCCGG CTCGCTGCGT CAAAAAGACC CTCGCATCAC CGCCACCCGT
CGCCTGAGCT TCTATGCGCA TGGTCTGGGG CAGCTCACTT GGGGGCCGGA CCATCCGCGC
GGCACCCATG ATGTGGTCGC CGACCAGTCG CAGGCCTACG ATCTATACAC CAAGTGGGGC
GTGCCGGTCT CCCCGCACAA TCGTGCGGTG ACCTCATTCC AGGAGATCCT GGACATGATC
GAGTACTACG GCGAGCATCG TGGCGACATC GAGCATGCAC TTGACGGCAT CGTCGTCAAG
GTCGATGACC TGGGCCTGCA GCGTACCCTC GGCGCCACTT CGCGCGCGCC GCGCTGGGCC
ATCGCCTACA AATACCCGCC CGAAGAGGTC AACACCGAAC TGCTCAACAT CACCGTGCAG
GTGGGGCGTA CTGGCCGTGT GACGCCGGTC GCCGTGCTCA AACCTGTCTA CGTGGCCGGC
TCCACCGTGG CTCGTACCAC GCTGCACAAT GGATTTGAAG TCAAGCGCAA GGGCATTCTG
ATCGGCGACA CCGTGGTGGT GCGCAAGGCC GGCGATGTGA TTCCCGAACT GGTCGGCCCG
GTGCTTGAAC GGCGCAAAGG GCGTGAGGAC CAGCTGCGCG AATTCGTCAT GCCCGAGTTC
TGCCCTTCAT GCGGCGCGAA ACTGTCACCC GCCAAGGAGG GGGACAAGGA CATTCGCTGC
CCGAATGTGG AGAGCTGCCC GGCCCAGTTG ACCGAGCGCG TGATTTCGCT GGCCTCACGC
AAGGCGTTCG ACATCGAGCA CTTGGGCGAA CAATCGGCCA TCGCTCTGAC CAACCCGGAG
GAGAACCGGC CTGATTCGGT GGCGACCTAC GCGCCGAACA TCACCGAGGT TCTGGTCGCC
CCCGGCGAAG AGCCTGACCC GTACGAGCCG GTGGAAGGGC TGGAATTGCC GGCCGCGCAG
AAGCCGGTGT TGTCCAACGA ATCCGGGTTG TTCAACCTGA CCGCCGCCGA TCTGCGCGAC
GTGCGCGTGT GGCGTGAGGC CGCAATCGTC GAGGTGCATG AGACGGTCGG TGCGAACGGT
AAGAAGAAAA AGGTGCGTAA GCGTGTCGGC GGCTCTGGCC TGTGGCATCA GGTGCCTGCC
TTCTGGACCG CGCCCACGCC GGCCAAAAAG CTCACGGCCA AGCAGCTGGT CGAACGCGCG
CAAGGGGAGG CCGCAATCGA ATCTGCCGAA ACACAGGGAG ATACCGCCAG CGAGACGACC
GGCGCACCTA CCGGGGCTGA GGCTCCACTT GGTACTATGC CGGGCTTTGC CGCAGCCTCC
TATCCTGAGT ATGACGTGCC GGCCGACGCG GTTATCGTGC GCGTGGATCA CAAGACCACG
CGCACTGGCG TCACGGATGT ACCGGTGATC ATTCGGCCCG GCGAAAACAC GCGCAAGATG
TTCGACGAAA TGGACAAGGC CCGTCACGCC GACCTGTGGC GTGTGCTGGT CGCGTTGTCG
ATTCGCCGGC TCGGTCCGCC TACCGCACGC CTGATTGCCT CGGCGATGGG CTCGCTGGCA
GCCATCGAAA ACGCCACGAT TGAAGATCTG ACGGCCATCG ACGGGGTGGG CCCGGAAATC
GCCGAATCGG TGGTGAACTG GTTCGCCGCC ACCCGCGAAC CCGGCGACTG GCGCGGCGCG
ACTTTGCGTG CTTGGCAGGC CGCCGGCGTG GGCGTCGACG AGGCCGAGAC CAGTTCGTTG
CCGCAGACGC TGGCCGGCAA AACCGTGGTG GTCACCGGTT CGTTGGAGGG CTATTCGCGT
GATTCCGCCA AAGAGGCGAT TATCGAGCGC GGCGGCAAGG CGGCCGGTTC GGTGAGCAAG
AAGACCGATT ACGTGGTGAT TGGCGCAAAC GCCGGCTCCA AGGCCGCCAA GGCCGAGGAA
CTCGGCATCC CCATGCTGAG CGAAACCCAA TTCGCCCAGC TCCTAGCCAC CGGCACCATC
TAA
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| Protein sequence | MSTNEQLAWD FDDGDVAAVR PDTGIARFAP GSEQWIAALQ PTDDDAIRLD RFDVNMMTAE
AAARLWARVA AWVESDQIAY YIDDSPVSSD AAYDARMRCL ERLEAAFPSL DNPQSPTHRV
GGSFSNDFTS VRHPSRMMSL DDVFSIEELK DWYDSVIRDL DWPESKPLPM SCEVKIDGLA
LNLIYRNGVL EQGLTRGDGV TGEDITLNVR TIGSIPANLG GPKEDVPDFV EIRGEVFMRW
DDFHTLNNEQ EDAGRAPFAN PRNAAAGSLR QKDPRITATR RLSFYAHGLG QLTWGPDHPR
GTHDVVADQS QAYDLYTKWG VPVSPHNRAV TSFQEILDMI EYYGEHRGDI EHALDGIVVK
VDDLGLQRTL GATSRAPRWA IAYKYPPEEV NTELLNITVQ VGRTGRVTPV AVLKPVYVAG
STVARTTLHN GFEVKRKGIL IGDTVVVRKA GDVIPELVGP VLERRKGRED QLREFVMPEF
CPSCGAKLSP AKEGDKDIRC PNVESCPAQL TERVISLASR KAFDIEHLGE QSAIALTNPE
ENRPDSVATY APNITEVLVA PGEEPDPYEP VEGLELPAAQ KPVLSNESGL FNLTAADLRD
VRVWREAAIV EVHETVGANG KKKKVRKRVG GSGLWHQVPA FWTAPTPAKK LTAKQLVERA
QGEAAIESAE TQGDTASETT GAPTGAEAPL GTMPGFAAAS YPEYDVPADA VIVRVDHKTT
RTGVTDVPVI IRPGENTRKM FDEMDKARHA DLWRVLVALS IRRLGPPTAR LIASAMGSLA
AIENATIEDL TAIDGVGPEI AESVVNWFAA TREPGDWRGA TLRAWQAAGV GVDEAETSSL
PQTLAGKTVV VTGSLEGYSR DSAKEAIIER GGKAAGSVSK KTDYVVIGAN AGSKAAKAEE
LGIPMLSETQ FAQLLATGTI
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