| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0001 |
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| Symbol | cspC1 |
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| ID | 6363657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 49 |
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| End bp | 288 |
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| Gene Length | 240 bp |
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| Protein Length | 79 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642679140 |
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| Product | cold shock protein |
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| Protein accession | YP_001953945 |
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| Protein GI | 189438864 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000455048 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCACAAG GTACCGTGAA GTTCTTCCTT GCCAAGAAGG GGTTCGGGTT TATCCAGCCG
GATGACGGCG GCGAGGACGT TTTCGTGCAC TACGCGGAAA TCAAGGACGA CGGCAGCACC
AATAAGTTCA AAATGCTGTA CGAAGGCGAT CGCGTGGAGT ATACGCCCGC TTCGTCCGGC
AAAGGCACGC AGGCAAAGGA TGTTGTCAAG CTGTCTTCGG GTGAAGCCCG CTCCGAGTGA
|
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| Protein sequence | MAQGTVKFFL AKKGFGFIQP DDGGEDVFVH YAEIKDDGST NKFKMLYEGD RVEYTPASSG
KGTQAKDVVK LSSGEARSE
|
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