Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Glov_1578 |
Symbol | |
ID | 6367722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter lovleyi SZ |
Kingdom | Bacteria |
Replicon accession | NC_010814 |
Strand | + |
Start bp | 1670067 |
End bp | 1671962 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642676976 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001951814 |
Protein GI | 189424637 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGGATA GAGCAACGGA TCGTAGCCAG GAGTTGATCG GCTATATCCG GGCAAAGACC AACCGGTTGC TGGAGGTGAT GGGAACGGTA CCGCTGAATC CGGAGGAGCT GGATGACGCT ACCTTACTGG CAGTGGACCC GATCGGGATT GTTACCGACT CCTTTGAACA GGTACTGGAG CACCTTCAGA AGACCAACAG CGAATTAGCC GCCACCAGGG ATGAGTTGCA GGCGATCTTT GATTCCGCCG GGGGCGCTAT TGTGGTGGTT GATGAGAAGA TGGAGGTGGT GGCCTGCAAT TCTTACAGTC AGTGGGCCTT GTTTGCCGGT GAACGTAACG TAATGGGTAA AAACCTGCGT TCCCTGATCT GCGGCCATGA TCAGGAGGAA TGCATCCTGG AACAGATTCT GACCACTCAA CGCCGGGTTG AACAGAACGA TTTTCTTCAT GACGGACGCC ATTATCATCT GGTGGGGACA CCGCTGAAAA ATCACGATGG TGCCATCAGC AGGGTGGTAC TGCTCTATAC CGATATTACC GAGCGTCGTG CCGCTGCGGA AGAAATTGAA CGCTTAGCCT TCTTTGACAG TCTGACCGGC CTGCCCAACC GGGTGCTGCT AAAGGATCGG TTGGCTCAAC TTTTGACCAG GGCCGGACGC TACAATGAAA TGGTGGCAAT CCTCTTCATC GATCTGGACC GTTTTAAGGA AGTAAACGAT ACCCTGGGGC ACGGCACGGG GGATCAACTG TTGCAGGTAG TGTCCGAACG GCTGACCGCC TGTCTGCGTA GCTGCGATAC CGTGGCTCGT CTGGGGGGGG ATGAGTTTGT CGTGCTGCTG CCGGGTATTA CCGAGCGCGA CTGCGTCGGC GATATTGCGG CAAAACTGCT GCAGTCGCTG TGCAAACCGG TGCAGTTGGA TGCGCGAGAA GTCTTTACCA GTGGGAGTAT CGGTATCTCG CTCTGGCCGA TTGATGGCGA TTCGGTAAGT ACGCTGTTTA AGAATGCCGA TACGGCCATG TATCACGCCA AGGAACAGGG CAGAAATACC TATCGTTTTT ACACGCCTCA GATGCACGCC ACTTCTATGG AACAGCTGAC CCTGAGCAAC GATCTGCGCT ACGCCTTGGA ACGGGGAGAG TTACATCTTT GCTATCAGCC TCAGGTCAGC TTTGAGACCG GTGGACTGAT CGGCGTAGAG GCACTGCTGC GCTGGATTCA TCCAAAGCTC GGTATGATTC CGCCTGATCG CTTTATCCCT TTGGCCGAAG ATACCGGTTT GATCGTGCCG ATCGGGACCT GGGTGTTGCA CGAAGCCTGT CGGCAGGCCA TGATGTGGGT AGCCCAAGGC CTGCCATCAC TGCGGGTGGC GGTTAATATC TCGGCCAAAC AGTTCCGGGA GTCAGATTTC AGCGATACGG TCAAGGCAGT CCTGCAGACG ACCGGACTGG CGCCCAACCT GCTGGAGCTT GAACTGACCG AAGGGATGCT GATTGAAAAT GTTACCCAGA CCAAGTTGAC CCTGCAGAGT TTAAAGGATA TGGGAGTGAC TCTGGCCATC GATGATTTCG GCACCGGTTA CAGTTCACTC AGCTACCTGA AGCATTTCCC GCTTGACCGG TTAAAGATCG ACAAGTCCTT TGTGAAGGAG ATTGCAGAGA AGTCAGGTGA CGCTGCTGCC ATCGTTGAAG CTGTGGTGGC TCTGGGGCAC AGCCTCAAGC TGACCGTGAT TGCCGAAGGA GTGGAACAGC AGGATCAGGT GGATTTTCTG CACAACCGCA AGTGTGATGA ACTACAGGGC TACTTCTTCA GCCGTCCCCT CACACCCCAG GCCTTGGAAG AACTGCTCCG CAAAGGAGTG AATGGGCCGG AGTTCTGTCT TTACCGCTAC CAGTGA
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Protein sequence | MQDRATDRSQ ELIGYIRAKT NRLLEVMGTV PLNPEELDDA TLLAVDPIGI VTDSFEQVLE HLQKTNSELA ATRDELQAIF DSAGGAIVVV DEKMEVVACN SYSQWALFAG ERNVMGKNLR SLICGHDQEE CILEQILTTQ RRVEQNDFLH DGRHYHLVGT PLKNHDGAIS RVVLLYTDIT ERRAAAEEIE RLAFFDSLTG LPNRVLLKDR LAQLLTRAGR YNEMVAILFI DLDRFKEVND TLGHGTGDQL LQVVSERLTA CLRSCDTVAR LGGDEFVVLL PGITERDCVG DIAAKLLQSL CKPVQLDARE VFTSGSIGIS LWPIDGDSVS TLFKNADTAM YHAKEQGRNT YRFYTPQMHA TSMEQLTLSN DLRYALERGE LHLCYQPQVS FETGGLIGVE ALLRWIHPKL GMIPPDRFIP LAEDTGLIVP IGTWVLHEAC RQAMMWVAQG LPSLRVAVNI SAKQFRESDF SDTVKAVLQT TGLAPNLLEL ELTEGMLIEN VTQTKLTLQS LKDMGVTLAI DDFGTGYSSL SYLKHFPLDR LKIDKSFVKE IAEKSGDAAA IVEAVVALGH SLKLTVIAEG VEQQDQVDFL HNRKCDELQG YFFSRPLTPQ ALEELLRKGV NGPEFCLYRY Q
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