Gene Glov_1339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGlov_1339 
SymbolrpoB 
ID6368022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter lovleyi SZ 
KingdomBacteria 
Replicon accessionNC_010814 
Strand
Start bp1381713 
End bp1386206 
Gene Length4494 bp 
Protein Length1497 aa 
Translation table11 
GC content51% 
IMG OID642676741 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_001951580 
Protein GI189424403 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTACT CGATCGCCAA CAACCACCTG CTGCGCAAAA ACTTTGCCAC TATCAAGAAT 
ATCATTGATA TCCCTAACCT GATTGACATT CAGAAAAACT CCTACCGTCG TTTTTTGCAG
TCTGACGTCC CGTTGGACTT GCGTAAAAAC ATCGGTCTTG AAGCTGTTTT TCGGTCTGTT
TTTCCTATAA AGGACTTCAG CGAAACATCA TCGTTGGAGT ATGTCTCCTA TACGCTGAGT
AAGCCCAAGT ATGATGTTGA GGAATGCCAT CAACGGGGTA TGACCTATGC AGCCCCTATG
AAGGTTAAGG TCCGGCTTGT CATTTGGGAT TCGGGTAAGG AGTCGGGTGT CCGTGGTGTT
AAGGATATTA AGGAGCAGGA GGTCTACTTC GGGGAAATAC CGTTGATGAC CGAAAACGGC
ACCTTTATTA TCAACGGCAC TGAGCGGGTT ATCGTTAGCC AGTTGCATCG TTCACCGGGT
GTATTCTTTG ACCATGATAA AGGTAAGACT CACTCTAGTG GTAAGGTCCT TTATTCTGCG
AGGGTAATTC CCTACCGCGG GTCTTGGCTC GACTTCGAGT TTGACCACAA GGATATTCTG
TTTGTACGGA TTGACCGTCG TCGCAAGATG CCGGCAACTG TCCTGCTAAA GGCTCTAGGA
TATTCAGTTG AACACCTCCT GAACTATTAC TACAAGAGTG AGCAGATCTA TATTGCTGCG
GGTGAGCTGC GTAAGGGCAT TGAACCCGAG TTGCTTACCA TGCAGAAGGC AGTAGTCGAT
GTTGCAGACG CTAATGGTGA GGTAATTGTA AAGGCCAACC GCAAATTCAC CAAGGCCTCT
ATAAAGAAAC TCTTGGATCA CGGAGTTACG AGCATTCCCA CCAGCTCCGA GAGCATTATT
GGCCGCTATG CTTCTGCTGA TGTTGTCGAT CCGGTAACCG GTGAAATACT GCTGGAATGC
AATCAGGAAC TGACAGCTGA TAAGCTTGAC GAGTTGCGTC AAAAAGAGGT TACAACCTTC
AACCTGCTGT ACATTGACGG TTTGAACGTC ACCTCTTCCT TCCGTGATAC GCTGCTTGCT
GATAAAATCA GCTCCAGTGA TGAAGCCTTG ATCGAGATTT ATCGGCGTTT GCGTCCGGGG
GATCCACCAA CTCTCAAGAG CTCACTGGCA CTCTTTGATA ACCTGTTCTT TAACCCTGAA
CGTTATGATC TTTCAGCTGT TGGTCGTCTG AAGCTGAACT TTAAACTGGG ACTGAAGGTG
TGGCCGGATT GTACGATTCT TAACGGACCC ACTATGTTGA CAGCTGCTGA GCTGCAAAAT
GCAGAGCAGT TGATTGGTAG CTTGCTGAAT GGTACCCGTC CAGTTGACCT GGCTTTAAAA
GACAGACTTT CAAGCGATCT GACTAAATCG CTTAAAAAGC TCGATTTGAA ACAACCGGTA
CCTGAGCGTC TGCTGGAACA GCTGGCTGAT GAACTGAATA GTGCGGTAGC CAACGCTGAG
TTCTTCCAGC GTGATCTGAT TGCAGGTCTT GAACTGCCTG AGTCGTTCAT AAAACTGATG
GATCTGATTG AGCAGGGTGG CTATGACGAA AATCGTCGGC GCATTGAAGG CCTGCGCCGC
AATCGTATGC TTTTGGAAGT TGCCTATGGC GACTCTGTGG AGTGCTGCAA CCGCAACGAC
ATTCTTGAGA TCGTTCGTTA TCTGATTGAG TTGAAAAATG GTCGTGGTGC GATTGACGAT
ATTGACCACT TGGGCAATCG TCGTGTCCGG GCAGTTGGTG AATTGCTTGA GAATCAGTAT
CGGATCGGTC TGGTACGGAT GGAGCGGGCA ATTAAGGAAC GGATGTCGTT GCAGGAAGTT
GAAAACCTGA TGCCGCACGA CTTGATTAAC TCAAAGCCTG TGTCTGCGGT TGTCAAGGAA
TTCTTTGGTT CATCGCAGCT GTCACAGTTT ATGGACCAGA CCAACCCTCT GTCTGAGGTC
ACTCATAAGC GTCGTCTGTC GGCTCTTGGA CCAGGTGGTC TGACCCGTGA ACGTGCCGGC
TTTGAGGTGC GGGACGTGCA TCCCACCCAC TATGGCAGGG TCTGCCCGAT TGAAACGCCG
GAAGGTCCGA ACATCGGCTT GATCGCTTCT CTCTCCACCT ACGCCCGGAT CAACGAGCAT
GGTTTTGTTG AAACACCGTA CCGCTTGGTA CGGGAGGGAC AGGTTACCAG TGAGGTGAAG
TTCTTCTCTG CACTGGAAGA GGAAGGACAT GCCATCGCCC AGGCAAATGC TCTGGTGGAT
CAGGACGGGC GGTTTATTAA TGAGTACGTC TCTGCACGGA AGAGCGGCGA GTTTGTACTG
GTGCAACGTG ACGAAATTGA GCTGATGGAC GTAGCACCCA AGCAGCTGGT ATCCGTTGCT
GCGGCACTGA TTCCGTTCCT GGAAAACGAT GACGCAAACC GGGCCCTGAT GGGATCCAAC
ATGCAGCGTC AGGCAGTTCC ACTGTTACGC GCGGATTCCC CGTTGGTGGG TACCGGCATG
GAACGTATTG TGGCGAAGGA TTCCGGCGTC TCGGTTATTG CCCGCCATAA TGGTGTTGTT
GATGCGGTTG ATGCAGGCCG GATCGTGATC AAAATTGATG AAGAAGAGTA TGATGAGACC
GGTACCGGCG TTGATATTTA CAATCTGGTG AAGTTCTCCC GCTCCAACCA GAATACCTGT
ATCAACCAAA AGCCGGTGGT AAAAGTCGGG GACAAGGTCA AACGCGGCGA TGTCATTGCT
GATGGCCCCT CAACCGATAT GGGCGAACTG GCCCTTGGTC AAAACATCAT TGTGGCCTTC
ATGCCTTGGG GCGGTTATAA CTTTGAGGAC TCCATCCTGG TTTCTGAACG GCTGACCAAG
GATGACCGCT ACACATCAAT TCACATTGAA GAATTTGAGT GTGTGGCCCG TGATACAAAG
CTAGGTAAGG AAGAAATTAC CGCTGATATC CCGAACCTTG GCGAAGAGGC TCTTAAAGAC
CTGGATGAGT CAGGTATCAT CAGAATCGGT GCCGAGGTCA AACCCGGCGA TATTCTGGTC
GGTAAAATCA CTCCCAAAGG TGAGACCCAG CTCTCTCCCG AAGAGAAACT GCTGCGTGCG
ATCTTCGGTG AAAAGGCCGG AGATGTCCGT GATACCTCCT TGACCATACC TCCGGGCGTG
GAAGGTACCG TTATCGGCGC CAAGGTGTTC TCCCGTAAAG GTAATGATAA GGACGCCCGG
ACTGAACTGA TTGAGAAGAT TGAGGAAGAA AAGCTTCGTA AGGATGAGCA GGATGAGGTC
CGTATTATCC GTGATTCAGC TCGCGGCAAG CTGAAGCGCC TCCTGGTGGG TAAGACTGCC
GGCGCCAAGA TTGAGGATCG TCACGGCGTA ACCGTTCTTG CCAAGGGCAA AAAGATTACC
GATGAACTGC TTGAGTCCCT GACCATGGAC CGTTGGGCAA CCATTTCAGT CAGTGACGGA
ACCGATGTCG AGGAAAAAGT CGCTGAGGTC CTGTCCAAAC TCAACGAGCA GGTCGAGCTT
ATTCGCGGGG TATTCGACGA TAAGGTTCAA AAGCTGAGAA GGGGCGACGA TCTGCCTCCC
GGCGTAATCA AGATGGTCAA GGTCTATGTT GCCATCAAGC GTAAGCTTCA GGTCGGTGAC
AAAATGGCTG GTCGCCACGG TAACAAGGGT GTCGTTTCAC GAATCCTGCC GGAAGAAGAT
ATGCCGTATA TGGACGATGG ACGTCCCGTT GAAATTGTGC TGAACCCTTT GGGTGTTCCT
TCCCGTATGA ACGTTGGACA GATCCTGGAG ACCCACCTCG GCTGGGCTGC TAAAGGTCTG
GGGTGGAAGA TTCAGAAGAT GCTGGAAGAG CATACCTCTG AAGAAAACCT GAAGAAGTTC
ATTCGTGAAA CATACGATAA TGCTGACTTC AATAAGATCC TTGATACCAT GGACCGTGAA
GAGCTGTTGC TGGTTGCGCG GCGCCTGTCA CGTGGCGTGC CGATGGCATC ACCGGTTTTC
GAAGGTGCCG GTGAGGCGAA AATCAAAGAG CTGTTGACCC GCGCCGGCTT TGCCACCAAT
GGCCAGGTAA CGCTTTTTGA CGGCCGTACT GGTGAGCCGT TTAAGCATAA GGTAACGGTT
GGTATCATGT ACGTCCTGAA ACTGCATCAC TTGGTCGATG ACAAGATCCA TGCCCGTTCA
ATCGGACCTT ACTCGCTGGT TACGCAGCAA CCACTGGGTG GTAAGGCTCA GTTTGGTGGC
CAGCGTCTGG GTGAAATGGA AGTCTGGGCG ATGGAGGCAT ATGGCTGTTC TTATGCACTG
CAGGAGTTCC TGACCGTCAA GTCGGACGAC GTCTCCGGAC GTACCCGCAT GTACGAAGCG
ATTGTGAAAG GTAAGCACAC GTTGGAGCCT GGCCTGCCAG AGTCATTTAA CGTGCTTATC
AAGGAACTTC AATCACTTTG CCTTGATGTG GAGCTGCTTG AAGGGGATGA GTAA
 
Protein sequence
MAYSIANNHL LRKNFATIKN IIDIPNLIDI QKNSYRRFLQ SDVPLDLRKN IGLEAVFRSV 
FPIKDFSETS SLEYVSYTLS KPKYDVEECH QRGMTYAAPM KVKVRLVIWD SGKESGVRGV
KDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFFDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL FVRIDRRRKM PATVLLKALG YSVEHLLNYY YKSEQIYIAA
GELRKGIEPE LLTMQKAVVD VADANGEVIV KANRKFTKAS IKKLLDHGVT SIPTSSESII
GRYASADVVD PVTGEILLEC NQELTADKLD ELRQKEVTTF NLLYIDGLNV TSSFRDTLLA
DKISSSDEAL IEIYRRLRPG DPPTLKSSLA LFDNLFFNPE RYDLSAVGRL KLNFKLGLKV
WPDCTILNGP TMLTAAELQN AEQLIGSLLN GTRPVDLALK DRLSSDLTKS LKKLDLKQPV
PERLLEQLAD ELNSAVANAE FFQRDLIAGL ELPESFIKLM DLIEQGGYDE NRRRIEGLRR
NRMLLEVAYG DSVECCNRND ILEIVRYLIE LKNGRGAIDD IDHLGNRRVR AVGELLENQY
RIGLVRMERA IKERMSLQEV ENLMPHDLIN SKPVSAVVKE FFGSSQLSQF MDQTNPLSEV
THKRRLSALG PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLIAS LSTYARINEH
GFVETPYRLV REGQVTSEVK FFSALEEEGH AIAQANALVD QDGRFINEYV SARKSGEFVL
VQRDEIELMD VAPKQLVSVA AALIPFLEND DANRALMGSN MQRQAVPLLR ADSPLVGTGM
ERIVAKDSGV SVIARHNGVV DAVDAGRIVI KIDEEEYDET GTGVDIYNLV KFSRSNQNTC
INQKPVVKVG DKVKRGDVIA DGPSTDMGEL ALGQNIIVAF MPWGGYNFED SILVSERLTK
DDRYTSIHIE EFECVARDTK LGKEEITADI PNLGEEALKD LDESGIIRIG AEVKPGDILV
GKITPKGETQ LSPEEKLLRA IFGEKAGDVR DTSLTIPPGV EGTVIGAKVF SRKGNDKDAR
TELIEKIEEE KLRKDEQDEV RIIRDSARGK LKRLLVGKTA GAKIEDRHGV TVLAKGKKIT
DELLESLTMD RWATISVSDG TDVEEKVAEV LSKLNEQVEL IRGVFDDKVQ KLRRGDDLPP
GVIKMVKVYV AIKRKLQVGD KMAGRHGNKG VVSRILPEED MPYMDDGRPV EIVLNPLGVP
SRMNVGQILE THLGWAAKGL GWKIQKMLEE HTSEENLKKF IRETYDNADF NKILDTMDRE
ELLLVARRLS RGVPMASPVF EGAGEAKIKE LLTRAGFATN GQVTLFDGRT GEPFKHKVTV
GIMYVLKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRLGEMEVWA MEAYGCSYAL
QEFLTVKSDD VSGRTRMYEA IVKGKHTLEP GLPESFNVLI KELQSLCLDV ELLEGDE