Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Glov_1339 |
Symbol | rpoB |
ID | 6368022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter lovleyi SZ |
Kingdom | Bacteria |
Replicon accession | NC_010814 |
Strand | + |
Start bp | 1381713 |
End bp | 1386206 |
Gene Length | 4494 bp |
Protein Length | 1497 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642676741 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001951580 |
Protein GI | 189424403 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCTACT CGATCGCCAA CAACCACCTG CTGCGCAAAA ACTTTGCCAC TATCAAGAAT ATCATTGATA TCCCTAACCT GATTGACATT CAGAAAAACT CCTACCGTCG TTTTTTGCAG TCTGACGTCC CGTTGGACTT GCGTAAAAAC ATCGGTCTTG AAGCTGTTTT TCGGTCTGTT TTTCCTATAA AGGACTTCAG CGAAACATCA TCGTTGGAGT ATGTCTCCTA TACGCTGAGT AAGCCCAAGT ATGATGTTGA GGAATGCCAT CAACGGGGTA TGACCTATGC AGCCCCTATG AAGGTTAAGG TCCGGCTTGT CATTTGGGAT TCGGGTAAGG AGTCGGGTGT CCGTGGTGTT AAGGATATTA AGGAGCAGGA GGTCTACTTC GGGGAAATAC CGTTGATGAC CGAAAACGGC ACCTTTATTA TCAACGGCAC TGAGCGGGTT ATCGTTAGCC AGTTGCATCG TTCACCGGGT GTATTCTTTG ACCATGATAA AGGTAAGACT CACTCTAGTG GTAAGGTCCT TTATTCTGCG AGGGTAATTC CCTACCGCGG GTCTTGGCTC GACTTCGAGT TTGACCACAA GGATATTCTG TTTGTACGGA TTGACCGTCG TCGCAAGATG CCGGCAACTG TCCTGCTAAA GGCTCTAGGA TATTCAGTTG AACACCTCCT GAACTATTAC TACAAGAGTG AGCAGATCTA TATTGCTGCG GGTGAGCTGC GTAAGGGCAT TGAACCCGAG TTGCTTACCA TGCAGAAGGC AGTAGTCGAT GTTGCAGACG CTAATGGTGA GGTAATTGTA AAGGCCAACC GCAAATTCAC CAAGGCCTCT ATAAAGAAAC TCTTGGATCA CGGAGTTACG AGCATTCCCA CCAGCTCCGA GAGCATTATT GGCCGCTATG CTTCTGCTGA TGTTGTCGAT CCGGTAACCG GTGAAATACT GCTGGAATGC AATCAGGAAC TGACAGCTGA TAAGCTTGAC GAGTTGCGTC AAAAAGAGGT TACAACCTTC AACCTGCTGT ACATTGACGG TTTGAACGTC ACCTCTTCCT TCCGTGATAC GCTGCTTGCT GATAAAATCA GCTCCAGTGA TGAAGCCTTG ATCGAGATTT ATCGGCGTTT GCGTCCGGGG GATCCACCAA CTCTCAAGAG CTCACTGGCA CTCTTTGATA ACCTGTTCTT TAACCCTGAA CGTTATGATC TTTCAGCTGT TGGTCGTCTG AAGCTGAACT TTAAACTGGG ACTGAAGGTG TGGCCGGATT GTACGATTCT TAACGGACCC ACTATGTTGA CAGCTGCTGA GCTGCAAAAT GCAGAGCAGT TGATTGGTAG CTTGCTGAAT GGTACCCGTC CAGTTGACCT GGCTTTAAAA GACAGACTTT CAAGCGATCT GACTAAATCG CTTAAAAAGC TCGATTTGAA ACAACCGGTA CCTGAGCGTC TGCTGGAACA GCTGGCTGAT GAACTGAATA GTGCGGTAGC CAACGCTGAG TTCTTCCAGC GTGATCTGAT TGCAGGTCTT GAACTGCCTG AGTCGTTCAT AAAACTGATG GATCTGATTG AGCAGGGTGG CTATGACGAA AATCGTCGGC GCATTGAAGG CCTGCGCCGC AATCGTATGC TTTTGGAAGT TGCCTATGGC GACTCTGTGG AGTGCTGCAA CCGCAACGAC ATTCTTGAGA TCGTTCGTTA TCTGATTGAG TTGAAAAATG GTCGTGGTGC GATTGACGAT ATTGACCACT TGGGCAATCG TCGTGTCCGG GCAGTTGGTG AATTGCTTGA GAATCAGTAT CGGATCGGTC TGGTACGGAT GGAGCGGGCA ATTAAGGAAC GGATGTCGTT GCAGGAAGTT GAAAACCTGA TGCCGCACGA CTTGATTAAC TCAAAGCCTG TGTCTGCGGT TGTCAAGGAA TTCTTTGGTT CATCGCAGCT GTCACAGTTT ATGGACCAGA CCAACCCTCT GTCTGAGGTC ACTCATAAGC GTCGTCTGTC GGCTCTTGGA CCAGGTGGTC TGACCCGTGA ACGTGCCGGC TTTGAGGTGC GGGACGTGCA TCCCACCCAC TATGGCAGGG TCTGCCCGAT TGAAACGCCG GAAGGTCCGA ACATCGGCTT GATCGCTTCT CTCTCCACCT ACGCCCGGAT CAACGAGCAT GGTTTTGTTG AAACACCGTA CCGCTTGGTA CGGGAGGGAC AGGTTACCAG TGAGGTGAAG TTCTTCTCTG CACTGGAAGA GGAAGGACAT GCCATCGCCC AGGCAAATGC TCTGGTGGAT CAGGACGGGC GGTTTATTAA TGAGTACGTC TCTGCACGGA AGAGCGGCGA GTTTGTACTG GTGCAACGTG ACGAAATTGA GCTGATGGAC GTAGCACCCA AGCAGCTGGT ATCCGTTGCT GCGGCACTGA TTCCGTTCCT GGAAAACGAT GACGCAAACC GGGCCCTGAT GGGATCCAAC ATGCAGCGTC AGGCAGTTCC ACTGTTACGC GCGGATTCCC CGTTGGTGGG TACCGGCATG GAACGTATTG TGGCGAAGGA TTCCGGCGTC TCGGTTATTG CCCGCCATAA TGGTGTTGTT GATGCGGTTG ATGCAGGCCG GATCGTGATC AAAATTGATG AAGAAGAGTA TGATGAGACC GGTACCGGCG TTGATATTTA CAATCTGGTG AAGTTCTCCC GCTCCAACCA GAATACCTGT ATCAACCAAA AGCCGGTGGT AAAAGTCGGG GACAAGGTCA AACGCGGCGA TGTCATTGCT GATGGCCCCT CAACCGATAT GGGCGAACTG GCCCTTGGTC AAAACATCAT TGTGGCCTTC ATGCCTTGGG GCGGTTATAA CTTTGAGGAC TCCATCCTGG TTTCTGAACG GCTGACCAAG GATGACCGCT ACACATCAAT TCACATTGAA GAATTTGAGT GTGTGGCCCG TGATACAAAG CTAGGTAAGG AAGAAATTAC CGCTGATATC CCGAACCTTG GCGAAGAGGC TCTTAAAGAC CTGGATGAGT CAGGTATCAT CAGAATCGGT GCCGAGGTCA AACCCGGCGA TATTCTGGTC GGTAAAATCA CTCCCAAAGG TGAGACCCAG CTCTCTCCCG AAGAGAAACT GCTGCGTGCG ATCTTCGGTG AAAAGGCCGG AGATGTCCGT GATACCTCCT TGACCATACC TCCGGGCGTG GAAGGTACCG TTATCGGCGC CAAGGTGTTC TCCCGTAAAG GTAATGATAA GGACGCCCGG ACTGAACTGA TTGAGAAGAT TGAGGAAGAA AAGCTTCGTA AGGATGAGCA GGATGAGGTC CGTATTATCC GTGATTCAGC TCGCGGCAAG CTGAAGCGCC TCCTGGTGGG TAAGACTGCC GGCGCCAAGA TTGAGGATCG TCACGGCGTA ACCGTTCTTG CCAAGGGCAA AAAGATTACC GATGAACTGC TTGAGTCCCT GACCATGGAC CGTTGGGCAA CCATTTCAGT CAGTGACGGA ACCGATGTCG AGGAAAAAGT CGCTGAGGTC CTGTCCAAAC TCAACGAGCA GGTCGAGCTT ATTCGCGGGG TATTCGACGA TAAGGTTCAA AAGCTGAGAA GGGGCGACGA TCTGCCTCCC GGCGTAATCA AGATGGTCAA GGTCTATGTT GCCATCAAGC GTAAGCTTCA GGTCGGTGAC AAAATGGCTG GTCGCCACGG TAACAAGGGT GTCGTTTCAC GAATCCTGCC GGAAGAAGAT ATGCCGTATA TGGACGATGG ACGTCCCGTT GAAATTGTGC TGAACCCTTT GGGTGTTCCT TCCCGTATGA ACGTTGGACA GATCCTGGAG ACCCACCTCG GCTGGGCTGC TAAAGGTCTG GGGTGGAAGA TTCAGAAGAT GCTGGAAGAG CATACCTCTG AAGAAAACCT GAAGAAGTTC ATTCGTGAAA CATACGATAA TGCTGACTTC AATAAGATCC TTGATACCAT GGACCGTGAA GAGCTGTTGC TGGTTGCGCG GCGCCTGTCA CGTGGCGTGC CGATGGCATC ACCGGTTTTC GAAGGTGCCG GTGAGGCGAA AATCAAAGAG CTGTTGACCC GCGCCGGCTT TGCCACCAAT GGCCAGGTAA CGCTTTTTGA CGGCCGTACT GGTGAGCCGT TTAAGCATAA GGTAACGGTT GGTATCATGT ACGTCCTGAA ACTGCATCAC TTGGTCGATG ACAAGATCCA TGCCCGTTCA ATCGGACCTT ACTCGCTGGT TACGCAGCAA CCACTGGGTG GTAAGGCTCA GTTTGGTGGC CAGCGTCTGG GTGAAATGGA AGTCTGGGCG ATGGAGGCAT ATGGCTGTTC TTATGCACTG CAGGAGTTCC TGACCGTCAA GTCGGACGAC GTCTCCGGAC GTACCCGCAT GTACGAAGCG ATTGTGAAAG GTAAGCACAC GTTGGAGCCT GGCCTGCCAG AGTCATTTAA CGTGCTTATC AAGGAACTTC AATCACTTTG CCTTGATGTG GAGCTGCTTG AAGGGGATGA GTAA
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Protein sequence | MAYSIANNHL LRKNFATIKN IIDIPNLIDI QKNSYRRFLQ SDVPLDLRKN IGLEAVFRSV FPIKDFSETS SLEYVSYTLS KPKYDVEECH QRGMTYAAPM KVKVRLVIWD SGKESGVRGV KDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFFDHDKGKT HSSGKVLYSA RVIPYRGSWL DFEFDHKDIL FVRIDRRRKM PATVLLKALG YSVEHLLNYY YKSEQIYIAA GELRKGIEPE LLTMQKAVVD VADANGEVIV KANRKFTKAS IKKLLDHGVT SIPTSSESII GRYASADVVD PVTGEILLEC NQELTADKLD ELRQKEVTTF NLLYIDGLNV TSSFRDTLLA DKISSSDEAL IEIYRRLRPG DPPTLKSSLA LFDNLFFNPE RYDLSAVGRL KLNFKLGLKV WPDCTILNGP TMLTAAELQN AEQLIGSLLN GTRPVDLALK DRLSSDLTKS LKKLDLKQPV PERLLEQLAD ELNSAVANAE FFQRDLIAGL ELPESFIKLM DLIEQGGYDE NRRRIEGLRR NRMLLEVAYG DSVECCNRND ILEIVRYLIE LKNGRGAIDD IDHLGNRRVR AVGELLENQY RIGLVRMERA IKERMSLQEV ENLMPHDLIN SKPVSAVVKE FFGSSQLSQF MDQTNPLSEV THKRRLSALG PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLIAS LSTYARINEH GFVETPYRLV REGQVTSEVK FFSALEEEGH AIAQANALVD QDGRFINEYV SARKSGEFVL VQRDEIELMD VAPKQLVSVA AALIPFLEND DANRALMGSN MQRQAVPLLR ADSPLVGTGM ERIVAKDSGV SVIARHNGVV DAVDAGRIVI KIDEEEYDET GTGVDIYNLV KFSRSNQNTC INQKPVVKVG DKVKRGDVIA DGPSTDMGEL ALGQNIIVAF MPWGGYNFED SILVSERLTK DDRYTSIHIE EFECVARDTK LGKEEITADI PNLGEEALKD LDESGIIRIG AEVKPGDILV GKITPKGETQ LSPEEKLLRA IFGEKAGDVR DTSLTIPPGV EGTVIGAKVF SRKGNDKDAR TELIEKIEEE KLRKDEQDEV RIIRDSARGK LKRLLVGKTA GAKIEDRHGV TVLAKGKKIT DELLESLTMD RWATISVSDG TDVEEKVAEV LSKLNEQVEL IRGVFDDKVQ KLRRGDDLPP GVIKMVKVYV AIKRKLQVGD KMAGRHGNKG VVSRILPEED MPYMDDGRPV EIVLNPLGVP SRMNVGQILE THLGWAAKGL GWKIQKMLEE HTSEENLKKF IRETYDNADF NKILDTMDRE ELLLVARRLS RGVPMASPVF EGAGEAKIKE LLTRAGFATN GQVTLFDGRT GEPFKHKVTV GIMYVLKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRLGEMEVWA MEAYGCSYAL QEFLTVKSDD VSGRTRMYEA IVKGKHTLEP GLPESFNVLI KELQSLCLDV ELLEGDE
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