Gene Clim_2202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2202 
Symbol 
ID6355996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp2442455 
End bp2443441 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content45% 
IMG OID642669793 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001944205 
Protein GI189347676 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.00000991185 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATACC AGATGCAGAT GCCTGCTAAA ATAGAGGTCG ACGAAGCTAC TCATACTGAC 
AGGTTCGGTC GTTTTGTCGC GCAGCCTCTC GAGAGGGGTT ATGGTGTAAC CCTCGGTAAT 
GTGATGAGAA GAGCGCTTCT GGCTTCACTT CCGGGAACTG CAATAACAGG TTTAAAAATA 
GATGGCGTTT TTCATGAGTT TTCGACCATA AACGGTGTCA GGGAAGATGT TCCCGAGATC 
GTTCTGAATC TTAAAAAGGT TCGGTTCCGT TCGAACTGCA AGAGAAACTG CAAGACATCA 
TTGGTGCTGA ATGGGCAGAA AGAGTTCACC GCAGGCGATA TTATCGCTCA GGAAGGTGAG 
TTCGAGGTAC TCAATAAAGA CCTTCATATT GCCACCGTGA ATGAAGGGGC TACACTGAAA 
ATCGATATCT TCGTCGGAAG AGGACGCGGA TACCTTCCAT CCGAAGAAAA CCGTCCTGAT 
GGCATGCCGA TAGGGTTTAT CGCTATCGAT GCTATTTTCA CTCCTATAAG GAACGTGAAA 
TTCACAGTTG AAAATACCCG TGTGGGACAG CGTACCGACT ACGAGAAAAT GATTCTCGAT 
GTCGAAACAG ACGGTTCGAT CACTCCGGAT GACTCTATCA GTCTTGCCGG AAAGATCATC 
AATGAACATG TCACCTTTTT TGCTGATTTC TCTCCGACCG AAGAAGAGTT TACCGAAGAG 
GAGTTCAAGC AGCAGGATGA TGAGTTCGAG AATATGCGCA AGCTTTTCAA TACAAAGATT 
GAGGATCTCG ATCTTTCGGT ACGTTCTCAC AACTGTCTCC GTCTTGCAGA AATCGATACT 
ATCGGAGATC TCGTATCGAG AAAAGAAGAT GAGCTGCTTA ACTATAAAAA TTTCGGCAAG 
AAGTCTCTGA CCGAGCTGAA AGAGCAGCTT GAGAAGTTCG ATCTGAAATT CGGTATGGAC 
ATTACCAAGT ATCAGATGAA AGGGTAA
 
Protein sequence
MIYQMQMPAK IEVDEATHTD RFGRFVAQPL ERGYGVTLGN VMRRALLASL PGTAITGLKI 
DGVFHEFSTI NGVREDVPEI VLNLKKVRFR SNCKRNCKTS LVLNGQKEFT AGDIIAQEGE 
FEVLNKDLHI ATVNEGATLK IDIFVGRGRG YLPSEENRPD GMPIGFIAID AIFTPIRNVK 
FTVENTRVGQ RTDYEKMILD VETDGSITPD DSISLAGKII NEHVTFFADF SPTEEEFTEE 
EFKQQDDEFE NMRKLFNTKI EDLDLSVRSH NCLRLAEIDT IGDLVSRKED ELLNYKNFGK 
KSLTELKEQL EKFDLKFGMD ITKYQMKG