Gene Clim_2003 details

Gene Information

• Locus tag: Clim_2003
• ID: 6355507
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 2223431
• End bp: 2223835
• Gene Length: 405 bp
• Protein Length: 134 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 642669601
• Product: putative transcriptional regulator, CopG family
• Protein accession: YP_001944014
• Protein GI: 189347485
• COG category: [K] Transcription
• COG ID: [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
• TIGRFAM ID: [TIGR02793] nickel-responsive transcriptional regulator NikR

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.000417208
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAAC TCTATCGATT CGGAATATCC CTTGAAAAAA CACTGATCGA TGCCTTTGAC 
CGCCATATCA GTGCACAGCA CTATAAAAGC CGTTCCGAAG CGCTCCGCGA TCTCATCCGC 
GAAGAGCTGC TGAAAAAGCA GTGGCGTGAA GGCGGCTCGG TCGCCGGCGC TATCGTCATG 
ACCTACGATC ACCACAAACG GGAACTGCTC AACATGCTGC TTGACATCCA GCATGATTTT 
CAGGAAACGA TAATTTCCAC ACAGCACGTT CATCTCGACC ATCACCACTG TCTTGAAATC 
ATCGCCGTCA GGGGAACCGC CGATCAAGTG GAAAAACTCG CAACGCAGCT CAAGGTGCAG 
GCGGGCGTCA AACATCTCAG CCTCAGCATT TCGACTGCAG GGTAA 

 

Protein sequence

MSELYRFGIS LEKTLIDAFD RHISAQHYKS RSEALRDLIR EELLKKQWRE GGSVAGAIVM 
TYDHHKRELL NMLLDIQHDF QETIISTQHV HLDHHHCLEI IAVRGTADQV EKLATQLKVQ 
AGVKHLSLSI STAG