| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1961 |
|---|
| Symbol | |
|---|
| ID | 6355016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 2176084 |
|---|
| End bp | 2176608 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642669559 |
|---|
| Product | Biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001943972 |
|---|
| Protein GI | 189347443 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00643734 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATGG TAGACTCTCC GAACGGTAAC CGATCCGCTA AAAAAGGAAA AAAGCGGCAG
AAAAGGATCG GTTTTCATCT TGATATGACG CCTATGGTCG ACGTTGCATT TCTGCTGTTG
ACCTTTTTCA TGCTGACCAC AACGTTTGCC AAATCAAATA CCATGGAAAT CAACCTTCCT
CCCGATACCG GAGAGGTGAA GGTTTCCGAG ACCAATGTCA TGATTGTCCG GCTTGCCGGT
GACGGTATGG CTTACTGTTC ACTGGGCGAA CAGATACCAC GCCGCATCGC TCTGTATGAT
TCAGGAGACG CAAACCGGCT TGCCCTGAGC GGAGAGTTGC GTTCACTTCT CAGGAAAGAG
AGTTCATCGA ATAAAAAAAT GGTGATTGTT GTCAAAATCA GCGAAAAGGC GAAATACAGG
AATCTTGTAG ACCTGATCGA TGAACTGAAC CTGATGAAGA TTGACCGTTT CAGTCTCGAT
GACTATACCG ATCAGGATGA AGCTGAAATT AAAAGGGCTG TTTAA
|
|---|
| Protein sequence | MGMVDSPNGN RSAKKGKKRQ KRIGFHLDMT PMVDVAFLLL TFFMLTTTFA KSNTMEINLP
PDTGEVKVSE TNVMIVRLAG DGMAYCSLGE QIPRRIALYD SGDANRLALS GELRSLLRKE
SSSNKKMVIV VKISEKAKYR NLVDLIDELN LMKIDRFSLD DYTDQDEAEI KRAV
|
|---|
| |