Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_1780 |
Symbol | |
ID | 6354609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | - |
Start bp | 1957520 |
End bp | 1958098 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642669383 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001943798 |
Protein GI | 189347269 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0000189837 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACATTA TAGAAAGTGC CATTCCCGAT GTCCTGATCA TTGAACCGAA AGTTTTCGGC GACGAACGGG GTTATTTTCT TGAAACGTAC CGGCAGGATG TAATAGAATC GCGTATCGGA AAGGTAGGGT TCGTGCAGGA TAACGAGTCG AAATCGTCGT ATGGCGTTTT GCGTGGACTG CATTACCAGA AGCCTCCATT TACCCAGTCA AAGCTGGTCA GGGCGGTTTC GGGAAGCGTG CTCGATATAG CTGTCGATCT GCGGAAAGGT TCGCCATGGT TCGGAAAGTA TGTCGGTGTC GAGTTGAGTG CGGAGCGTAA GAATATGCTG TGGATTCCGA AAGGGTTCGC TCATGGTTTC GTGGTGCTTT CGACAGAGGC GGTATTCGCT TATAAATGTG ATAACTATTA TGCTCCCGAT CATGATGCCG GAGTGCTCTG GAACGATCGC GAACTTGCAA TTGACTGGCA GATTCCGGAA TCGGACATCA GGGTGTCGGA TAAAGATGCG AAACAGCAAT TATTTGCAGA GGTCGATTGC TTTATCTATG ACGAGTTCAA AAGGGAGACA CTGTACTGA
|
Protein sequence | MNIIESAIPD VLIIEPKVFG DERGYFLETY RQDVIESRIG KVGFVQDNES KSSYGVLRGL HYQKPPFTQS KLVRAVSGSV LDIAVDLRKG SPWFGKYVGV ELSAERKNML WIPKGFAHGF VVLSTEAVFA YKCDNYYAPD HDAGVLWNDR ELAIDWQIPE SDIRVSDKDA KQQLFAEVDC FIYDEFKRET LY
|
| |