Gene Clim_1780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1780 
Symbol 
ID6354609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp1957520 
End bp1958098 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content48% 
IMG OID642669383 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001943798 
Protein GI189347269 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1.89837e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATTA TAGAAAGTGC CATTCCCGAT GTCCTGATCA TTGAACCGAA AGTTTTCGGC 
GACGAACGGG GTTATTTTCT TGAAACGTAC CGGCAGGATG TAATAGAATC GCGTATCGGA
AAGGTAGGGT TCGTGCAGGA TAACGAGTCG AAATCGTCGT ATGGCGTTTT GCGTGGACTG
CATTACCAGA AGCCTCCATT TACCCAGTCA AAGCTGGTCA GGGCGGTTTC GGGAAGCGTG
CTCGATATAG CTGTCGATCT GCGGAAAGGT TCGCCATGGT TCGGAAAGTA TGTCGGTGTC
GAGTTGAGTG CGGAGCGTAA GAATATGCTG TGGATTCCGA AAGGGTTCGC TCATGGTTTC
GTGGTGCTTT CGACAGAGGC GGTATTCGCT TATAAATGTG ATAACTATTA TGCTCCCGAT
CATGATGCCG GAGTGCTCTG GAACGATCGC GAACTTGCAA TTGACTGGCA GATTCCGGAA
TCGGACATCA GGGTGTCGGA TAAAGATGCG AAACAGCAAT TATTTGCAGA GGTCGATTGC
TTTATCTATG ACGAGTTCAA AAGGGAGACA CTGTACTGA
 
Protein sequence
MNIIESAIPD VLIIEPKVFG DERGYFLETY RQDVIESRIG KVGFVQDNES KSSYGVLRGL 
HYQKPPFTQS KLVRAVSGSV LDIAVDLRKG SPWFGKYVGV ELSAERKNML WIPKGFAHGF
VVLSTEAVFA YKCDNYYAPD HDAGVLWNDR ELAIDWQIPE SDIRVSDKDA KQQLFAEVDC
FIYDEFKRET LY