Gene Clim_1729 details

Gene Information

• Locus tag: Clim_1729
• ID: 6354557
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 1899430
• End bp: 1901361
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 642669333
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001943749
• Protein GI: 189347220
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGGATA CAGTAAAGCT TCCGATTCAT CAGGAAAAAT TCCTGTTGCC CGAGATTCAG 
TCCCCGGACG ACCTGAAAAA ACTCTCCATT ACCGAACTGC AGCTCCTTGC CGAAGAATGT 
CGCAATGAGG TCATCAATCT TGTCTCCGAG AACGGAGGTC ATTTCGCCTC CACTCTCGGA 
GTTGTCGAAC TTACCGTTGC CCTGCACCAC GTCTATAACT CTCCTCAGGA CAAAATCATC 
TGGGATGTCG GCCATCAGGC CTATGTACAT AAAATCCTGA CCGGCCGAAG AGCGCGCATG 
CACACCAACC GTCAGTACGG AGGTCTTGCC GGATTTCCGA AAATAACCGA AAGCCCATAT 
GACGCTTTCG GAACCGGTCA TGCATCCACC TCGATCTCGG CAGCAGCAGG AATAGCCGCA 
GCACGCGACC TGGCAGGTAG CGGTGAAAAG GTTATCGCGG TAATCGGCGA CGGAAGCATG 
ACCGGAGGCA TGGCGTTCGA AGCCATGAAC CACCTCGGCG ACCTGAAAAG CGATGTTCTG 
GTCATTCTCA ACGACAACCA GATGGCCATC TCTCCGAGCA CTGGCGGCCT GAAAACCCAT 
CTGATCAACA TCACGCTCAA CAAGACCTAC AACCGTACCC GAAAATTCAT CTGGAACTCC 
ATTTCGCTCC TGAACAACGA GTTCGGTGAC GCCGCGAAAA ACGCGGTAAG AAAACTTGAA 
GACGGCTTCA AGGCCGCCTT TACACCGGGA GCTTTTTTCG AGGCACTCGG CCTGCGTTAT 
TTCGGCCCGA TCGACGGCCA TAACATGGAG CAGCTTGTAA AGGCACTACG GGAGATGCAG 
GAACTGCCGC ATCCGAAACT GCTCCATATC GTTACCACAA AAGGCAAGGG ATTCAAACCG 
GCCGAGGACA ACCAGAGCAA GTGGCATGCC CACAGCGGCG GATTCGACCG GATTACGGGC 
ATAACACCAA AAACGGACGG GAAACCGCAA CCTCCAAAAT ATCAGGAGAT TTTCGGCGAA 
GCCCTCGTGG AGCTTGCCCT GAAGGATGCA CGTATTACGG CAATTACAGC CGCCATGCCA 
AGCGGAACAT CTCTCGATCT TTTTCAGAAT GCCCTGCCGA ACCGCTTCTA CGATGTCGGC 
ATTGCCGAAG CACATGCCGT AACCTTTGCC GCCGGACAGG CTACAAAAGG CTTTCTGCCG 
GTCTGTGCCA TCTACTCCAC CTTTCTGCAG CGGGCCTACG ATCAGATCAT TCACGATGTT 
GCACAGCAGA ACCTGCATGT AGTGTTTGCC ATCGACAGGG CAGGCCTTGT TGGAGAGGAC 
GGGCCAACCC ACCACGGATC GTTCGACCTC TCCTACCTGC ACGCCGTTCC GAACCTCACC 
GTCATGATGC CGGCCGATGA ACAGGAATTG CGCGACATGC TCTATACTGC GCTTTATGAG 
ATCAGCGGGC CGGTCGCGAT CCGTTACCCG AGAGGCAGCG GTACCGGCGT CGCACTCCGC 
AAAACCTTTA CGCAGGTCGA AACGGGAAAG GGAATCCTCC TGCGGGAAGG CTCCAAGATA 
GCCCTGCTTA CGGCAGGACC GCTGACCGAC ATGGCTCTCG ATGTAGCCGA TACACTGCAG 
CAAGAAGGCC TGGGCGTATC GGTAGCCAAC ATGCGATTCC TCAAGCCTGT AGACACCGCT 
CTTATCGAAA AACTTGCGGG GAGCTCGACT CACTTTGCCG TTATCGAAGA AAACAGCGTT 
ATCGGCGGCC TGGCAAGCGC AGTAATCGAC TGCCTCAACG AACAAGGCAT TGCCCGACCG 
GTACTGAAAA TCGGCCTGCC CGACCGGTTT ATCACTCACG GCAGCATGGC CGAACTTTAC 
CGGGAAACCG GTATGACTGC AGAAGCCGTA CTGAAAAGAA TAAAGGAGTT CTACAAGGGT 
AGCACGATGT GA 

 

Protein sequence

MPDTVKLPIH QEKFLLPEIQ SPDDLKKLSI TELQLLAEEC RNEVINLVSE NGGHFASTLG 
VVELTVALHH VYNSPQDKII WDVGHQAYVH KILTGRRARM HTNRQYGGLA GFPKITESPY 
DAFGTGHAST SISAAAGIAA ARDLAGSGEK VIAVIGDGSM TGGMAFEAMN HLGDLKSDVL 
VILNDNQMAI SPSTGGLKTH LINITLNKTY NRTRKFIWNS ISLLNNEFGD AAKNAVRKLE 
DGFKAAFTPG AFFEALGLRY FGPIDGHNME QLVKALREMQ ELPHPKLLHI VTTKGKGFKP 
AEDNQSKWHA HSGGFDRITG ITPKTDGKPQ PPKYQEIFGE ALVELALKDA RITAITAAMP 
SGTSLDLFQN ALPNRFYDVG IAEAHAVTFA AGQATKGFLP VCAIYSTFLQ RAYDQIIHDV 
AQQNLHVVFA IDRAGLVGED GPTHHGSFDL SYLHAVPNLT VMMPADEQEL RDMLYTALYE 
ISGPVAIRYP RGSGTGVALR KTFTQVETGK GILLREGSKI ALLTAGPLTD MALDVADTLQ 
QEGLGVSVAN MRFLKPVDTA LIEKLAGSST HFAVIEENSV IGGLASAVID CLNEQGIARP 
VLKIGLPDRF ITHGSMAELY RETGMTAEAV LKRIKEFYKG STM