Gene Clim_1602 details

Gene Information

• Locus tag: Clim_1602
• ID: 6354250
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 1726428
• End bp: 1729841
• Gene Length: 3414 bp
• Protein Length: 1137 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 642669203
• Product: Patatin
• Protein accession: YP_001943625
• Protein GI: 189347096
• TIGRFAM ID: [TIGR03607] patatin-related protein

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAATT CGCTGAAATC CGAAACCCGA TTCGCCGTCG TGATGTACGG TGGCGTTTCA 
CTTGCGATTT ACATGAACGG TATTGCGCAG GAGCTGTTGC GAATGGTTCG GGCAACTGCT 
ACCCGGAGAG GCGATGATAC ACCTCTTATT CCTTATTGCA AGCTTGACAG GGGTGAATCG 
GTGTACCGCA AAATAGCCTA TCAGCTTGCC GGCAATACCG ATCCTGAGAA CATCCGGATT 
CTTCTGAAAA ACGATGCCCC CCTTACAAGA AAATTTACTA TCGACGTCAT TTCCGGCACC 
TCGGCAGGCG GTATCAACGG CATATTTCTT GCAAAGGCTC TTGCGACGGG ACTTAAAATC 
GATGAACTCA AGAATCTCTG GATCAGTGAA GGCGATGCGA GCCTGCTTAT CAACGATAAA 
AACTCGACGA AAAAAACCGG ATTGAAACTC AGGAAAGAGC CCCGATCTCT TTTCAACAGC 
CAGAGAATGT ACCAGAAGCT TCTCGAGGCT TTTGAGAAAA TGGAAGGGAA GGATAATGAC 
ACATCAGCAG CAGAGCCCTA CATTGATGAA CTCGACCTCT TTGTGACAGC AACCGATATT 
CTCGGTCTTA CTCTTCCTCT AAAGCTATCC GATTCGACGG TATACGAACG AAAGCACCAG 
ACTGTGTTCC GTTTTTCATG TTCCCGATCC GGCAGCAGAT ACTGGAACGA TTTTGTAGCC 
GATAACAACC CCATGCTTGC CTTTGCAGCC CGTTCAACCT CTTCATTTCC ATTTGCCTTC 
GAGCCGGTAA TGCTGAGGGA TATCGACGAA GTACTTAAGA ACAAGCGATA CAAGGAGGAG 
TATTTTTCAA CCGGAAAACG GTGGAAAAGA TTTTTTAAAA ACTATCCGGA AATAGCTTCC 
TCCGGAACTG TCGGTTATCA GTTGCGCTCT TTCGGAGATG GAGGCTACCT CGACAATAAG 
CCCTTTTCTT ATGCGATCGA AACCATATCG GCAAGGCATT CCGATTACCC GATTCAACGT 
AAACTGCTTT ATATAGAACC CGTTCCCGAT CATCCTGAAT CAGCCAGCGA AAACGAGGAG 
CGTCCCAACG CTTTTGAAAA CACGATCGAT GCATTGCTGA AGCTTCCCCG GTATGAAACC 
ATTCGGGAAG ATCTTGAAAA AATCATTGAA CGAAACCGGT TGACCGAGAG GATCGAACGC 
ATCATCAGAA ATCTGGATCG CGACAAGAGC GAATCAAGAT GGTCGCCCGC CTATAAAGCG 
CTGTACAGAG AATGGGAAAC CAGAAAGGAG CGGAGTGCCG GAACTGTTTT TACCGAACCT 
GAACCGCTAT GGGCAAAATC GCTGTTGAAC GACAGGGAGT GGGCCTTGCT CGATCTTGCC 
GATATGACTC TCCGTAAAGG TCCCGGATAC GTGGCGTATC ACAGGCTCGA GATCGAAGCG 
GTAACCGACG ATTTCGGAAA GCTGCTTGCA AGAGTCGGCG GCTTCGATGA AAATTCAGAT 
ACTGTTTTCG TTTTCAGAAA TCTCCTTAAA GCATGGCGGT CGAAGATGTT TGTGGAGTAC 
CGCAGTGAAG AGAACTCATC TGAAAAGCCG CCTAAAACCA TGAACTCGTT TCTGCACTCG 
TTCGATCTTA CTTTTCCGCT CAGAAGGCTT CATTTTCTCA AACGGCAGAT CGACCGTCTC 
TACCTGATGG ATGACGATGC ACTGGAGCGA GACGCAGCAA GCTGGCCGGA GCAGATCTTG 
CCGGATGATC GTTTATGGAT ACAGTCCTTC AGGGATGAAC TGCTTTCTAT CAGAAAGACC 
GTTGTGCGTA TGCAGGTTAT GCTGACGGAT GTCGGCCGAA AACTTCGGTC GCGGTTCCGG 
AGCGAGGGTG ACGATACGGA AGCCTCTCTG CGTGTAAAAC CGGTTTATGA ACTGGTTGAA 
CGACTGGTTC AGATTCTATC CTCCAGTCCT GAAATACTTG CCGCCGAAAC GCAATCATGT 
CGAAGGAAAG GGCTCGGAGT GACCTGTACC ATTGGCAGCC CGGGAGAACT CGAAAACTCA 
TTTCGGCATG TTATCGATTT CTTTCTCGAT AAAAATCAGT ACAGTAAATC AGGATCAGGG 
AATCCCGAAG GTGCCGATTC AAGAGGAGTC ACTGAAGAAC AGGATAGTGA AGTCAAGGCA 
CGGAGCTTTC TTGACCGCAA CCAGCCTGTT TTTCGTCTTT TCGATGAGAT CGGTGAGGCC 
ATCGAAATGC CGATGAGAAT TGCTATCGAG AAGAGCGATG AAGCGTGCCG GAACATTCTC 
TTTATGGATA CTAATGGTAT TGCCGCAACT CCCGGCCAGA TGGCGGCCCG TTTGATGATG 
CGTGCCTACT ATAAAAATTA CAGTGATTAC GATATGGTGC TTTTTCCCAT TCTCTATGGT 
ACTGGAGTCG GAGAAGGGGG GCGGATTGAT GTTTCACGTA TCAGTCCTGA AGACGCAACC 
TTTCTTGTCG ATGAACGGCA GAGCGGGTTG CGAAAGCTCG CGGGAAGCGC ATTTGGCAGT 
TTTGGGGCGT TCATGGAAGA GCGGTGGCGC CGGAACGACA TCATGTGGGG TCAGCTCGAC 
GGTGCCGAGC GCATTATTGC AACCCTCATA CCCGACAGGG AGGAGGCCGA AAAGTATATC 
GGAGAGATTC AGGCGGCAAT TGTGCTCGAT ACCATTCAGG TGATGGGCAG GAACGAGGCA 
AAAGATCTGC TTGTAGAGAC CTTCATGCGA CCCGACAGTG GCAAGCCGGA ACCCGAAAAG 
GTTTCAGCGT TCATTCGTAC CCTGCAGAAA TATGCAGGGC AAGCAGGCTG TCAGGGCACA 
GAAGTTTCTG ACGTTCCCGA AGATCTGGAT GAACGCGAGC TTCGCGATCA CTATCTTAGA 
ATATTTTCGG CGAACAACGG TCTCGAGCCT GAAAGGGCCC TGAAAAACGC CGCACGTGCC 
ACCACCGTAA CCGGAAAAAT TCTCTCTGGT ATTGCCGATC AGTACGGCAT TGCGGATAAA 
AAGTATTTAT CGGTCATAAC GAGAGCCGGG ACTTTTTTAC TGTGGCTTGT CGAGGCGGCC 
GTTCCGCGAA GCATGACCAG CCTTGTTTTC AAACACTGGC TCAAGCTTCT CTATCTTTTC 
GAAGTACTGC TTCTTGCTGC AGGTTTTCTC TTTTTGAATG AGCATGTACA GCGTCTTGGT 
CTGACCATTG CGGGTGTTAC CGCAGCACTG CATATCGCGT TTTTGTGGGT CAGGGATATA 
GTGCTTTCCA GAAAACGTGT TTCTATGGCA CTTGGAAGCA TTCTTGTCGT GCTTGTTCTT 
GTTCTGTTCG TTTCAGGTCT GGCGATTATT TTTGCCGTTA CCGGCGCTTC TGGTGATCTT 
TGGAGCGTAT TCGAGGCGCT GCACGATTGG TTCACCATAA CAAAAAGCGC TTAG 

 

Protein sequence

MSNSLKSETR FAVVMYGGVS LAIYMNGIAQ ELLRMVRATA TRRGDDTPLI PYCKLDRGES 
VYRKIAYQLA GNTDPENIRI LLKNDAPLTR KFTIDVISGT SAGGINGIFL AKALATGLKI 
DELKNLWISE GDASLLINDK NSTKKTGLKL RKEPRSLFNS QRMYQKLLEA FEKMEGKDND 
TSAAEPYIDE LDLFVTATDI LGLTLPLKLS DSTVYERKHQ TVFRFSCSRS GSRYWNDFVA 
DNNPMLAFAA RSTSSFPFAF EPVMLRDIDE VLKNKRYKEE YFSTGKRWKR FFKNYPEIAS 
SGTVGYQLRS FGDGGYLDNK PFSYAIETIS ARHSDYPIQR KLLYIEPVPD HPESASENEE 
RPNAFENTID ALLKLPRYET IREDLEKIIE RNRLTERIER IIRNLDRDKS ESRWSPAYKA 
LYREWETRKE RSAGTVFTEP EPLWAKSLLN DREWALLDLA DMTLRKGPGY VAYHRLEIEA 
VTDDFGKLLA RVGGFDENSD TVFVFRNLLK AWRSKMFVEY RSEENSSEKP PKTMNSFLHS 
FDLTFPLRRL HFLKRQIDRL YLMDDDALER DAASWPEQIL PDDRLWIQSF RDELLSIRKT 
VVRMQVMLTD VGRKLRSRFR SEGDDTEASL RVKPVYELVE RLVQILSSSP EILAAETQSC 
RRKGLGVTCT IGSPGELENS FRHVIDFFLD KNQYSKSGSG NPEGADSRGV TEEQDSEVKA 
RSFLDRNQPV FRLFDEIGEA IEMPMRIAIE KSDEACRNIL FMDTNGIAAT PGQMAARLMM 
RAYYKNYSDY DMVLFPILYG TGVGEGGRID VSRISPEDAT FLVDERQSGL RKLAGSAFGS 
FGAFMEERWR RNDIMWGQLD GAERIIATLI PDREEAEKYI GEIQAAIVLD TIQVMGRNEA 
KDLLVETFMR PDSGKPEPEK VSAFIRTLQK YAGQAGCQGT EVSDVPEDLD ERELRDHYLR 
IFSANNGLEP ERALKNAARA TTVTGKILSG IADQYGIADK KYLSVITRAG TFLLWLVEAA 
VPRSMTSLVF KHWLKLLYLF EVLLLAAGFL FLNEHVQRLG LTIAGVTAAL HIAFLWVRDI 
VLSRKRVSMA LGSILVVLVL VLFVSGLAII FAVTGASGDL WSVFEALHDW FTITKSA