Gene Clim_1534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1534 
Symbol 
ID6354181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp1654928 
End bp1656193 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content49% 
IMG OID642669140 
Productprotein of unknown function DUF214 
Protein accessionYP_001943563 
Protein GI189347034 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGA ACCTGCTGCA GTTCCGCTAT GAAACCGCTG AAAGTTTGAA AATCGCACTC 
TTTCAGATAC AATCGAATAA AATCAGATCG TTTCTTACCG CACTCGGCGT CATTATCGGC
ATTGTCTCCA TTACCATGAT GGGCACCGCG ATCAATGGTA TCGACATTGG TTTTGAAAAA
AGTCTGTCCA TGATCGGCTA TGATGTGATC TACGTACAGA AAACCTCGTG GAGCACCATG
GGAGAGTGGT GGAGATACCG TAACCGTCCC GACCTGAAAA CGGAGTATGC CCAACAGATA
AACCGCATCA TTGCCGATAA CCCCGCGACG GAAATTGAAA TTGCCGTACC TCAGATGTCT
ACCTATCAGG CAATGGCAAC CTATAAGGAC AGAGTGCTTG AACAGATCTT TTCACTCGGC
ACTAACCAGG AATACCTGAA AACCGCATCA GGCGATCTTG CGGCAGGACG CTTCTTCACC
CCGGGAGAGT CTGCGGGAAG CGAGATGGTC TGCGTAGTCG GCGACGATAT AGCTTCGGGC
CTTTTTCCCA ATGAGAACGC ACTCGGAAAA ACCATAAGCC TGAAAAACCG GAAGTTCAGG
ATCGTAGGCG TTTTTAAAAA ACAAGGGAAA TTTCTCGGAC TTTTCAGTTT CGACAACCAG
GTCATCATGC CGCTTGGCGC CTTTGAAAAG GTCTACGGGC GAAAGATGTT TGTGACCATA
CGGGTTAAAA TCAAGGATGA GAGCCGTGTT GCCGAAGCGA AAGAGGAACT GCTTGGTCTG
ATGCGGAGGA TCCGCAGAAT TGCACCCGGA AAAGAGGAGA ATTTCTCGAT AAACGAACAG
AAAGCCTTCA AGAGCCAGCT CGACCCGATC AAGAACGGTA TAGCGGCAGC AGGCATCTTT
ATTACCGGCA TGTCGCTCTT TGTCGGAGCC ATCGGCATCA TGAACATAAC CTTTGTCAGC
GTCAGGGAGC GGACGAGAGA GATCGGCCTG AGAAAAGCGC TCGGGGCAAA AAGAACAACC
ATACTGCTGC AGTTCCTTAT TGAATCGGTG ATGATCTGCC TGCTTGGCGG ATTTATCGGC
CTGGTGACGG CACTCCTCAT AACCTTTACC ATTGAAAAGG CCATTCCCGA CTTTCCGGTA
CAGTTTTCGT TTACCCTGGT ATTTGCCAGC CTCGGTGTTT CAGTGCTCAC CGGTATTATT
TCAGGTCTTG CGCCTGCGGT GAATGCATCA AAACTTGATC CTGCAGATTC ACTGCGATAT
GAGTAA
 
Protein sequence
MKQNLLQFRY ETAESLKIAL FQIQSNKIRS FLTALGVIIG IVSITMMGTA INGIDIGFEK 
SLSMIGYDVI YVQKTSWSTM GEWWRYRNRP DLKTEYAQQI NRIIADNPAT EIEIAVPQMS
TYQAMATYKD RVLEQIFSLG TNQEYLKTAS GDLAAGRFFT PGESAGSEMV CVVGDDIASG
LFPNENALGK TISLKNRKFR IVGVFKKQGK FLGLFSFDNQ VIMPLGAFEK VYGRKMFVTI
RVKIKDESRV AEAKEELLGL MRRIRRIAPG KEENFSINEQ KAFKSQLDPI KNGIAAAGIF
ITGMSLFVGA IGIMNITFVS VRERTREIGL RKALGAKRTT ILLQFLIESV MICLLGGFIG
LVTALLITFT IEKAIPDFPV QFSFTLVFAS LGVSVLTGII SGLAPAVNAS KLDPADSLRY
E