| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1432 |
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| Symbol | |
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| ID | 6356203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | - |
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| Start bp | 1538424 |
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| End bp | 1541612 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642669043 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001943471 |
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| Protein GI | 189346942 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.366623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAAA AATTTATAAC ACGTCCGGTA CTTGCCACCG TCGTCTCCAT CGTGCTGGTG
ATTCTCGGCA TTGTGGGCAT GGGCCGGCTG CCGGTCACGC AGTTTCCCGA TATCGCGCCT
CCGAGTGTTG TGGTAACGGC CATGTACCCC GGCGCAAGCG CCGAAACCAT AGCCCGTTCG
GTTGCGCCTT CGCTCGAGGA GGCGATCAAC GGGGTCGAGA ACATGACCTA CATGACCTCG
ACTTCGGGCA ACGACGGCAT GCTCACCATT ACGGTTTACT TCAAGCTCGG CACCGATGCC
GATCAGGCGG CCGTGAACGT GCAGAACCGC GTCTCCCAGG CGCAGAGTCA GCTCCCTTCG
GCGGTAATCG AACGCGGCAT TACCACGGTG AAGCAGCAGA ACAGCATGAT CATGGTTATC
AGTCTCATCA GCGACAGCCC CAATTACGAT GAGACCTTTC TGCAGAACTA TGCGAAAATC
AACCTGATTC CGGATATCAA GAGGGTGCCG GGTGTTGGCC AGGCAACCGT GTTCGGCAAC
AAGGACTACT CCATGCGCAT CTGGCTGAAA CCGCAGCAGC TTGCGGCATA CAGCCTGACT
CCGGCGGAGG TCGCTGCGGC CATTCAGTCG CAGAACATCG AGGCGGCACC GGGCAAGTTC
GGCGAGGGAA GCCGCGAGGC CATGGAGTTC ATCATCAAGT ACCGCGGAAA ATTCAATACC
ACGGAGGATT TCGGCAACAT TGTCATCCGC TCGGGCCAGG ACGGCATGCA GCTCCGGCTC
AGGGACGTGG CCCGCATCGA ACTGGGTTCT TACGACTATA CCGTAAACTC GAAAGTCGAC
GGGCATCCCT CGGTGACCAT GGCCATCTAC CAGGCGGCGG GCTCCAACGC AAACGCCATT
CAGACCGAGC TGCAGCAGGT TCTCGACAAA GCCTCGGAGT CACTTCCTGC AGGGATAAGC
TATGCTGTGC CCTACAGCAC CAAGAAATCG CTCGACGAGT CGATCGAACA GGTCATTCAC
ACCCTGCTCG AAGCGTTCGC ACTTGTTTTC CTTGTTGTGT TCATTTTTCT GCAGGATTTC
CGTTCCACGC TGATTCCCGC CATTGCCGTG CCGGTCGCCA TTGTCGGTAC CTTTTTCTTC
ATGAACCTCT TCGGGTTCTC CATCAACCTG CTGACGCTCT TTGCGCTGGT GCTGGCCATC
GGCATCGTGG TGGACGATGC AATCGTGGTG GTCGAGGCGG TGCACGCCAA GATGGAGCAC
CGCGGTCTTT CGGCTGCTCC CGCTACCGCG TCGGCCATGA GCGAGATAAC CGGAGCCATC
GTCTCCATCA CGCTGGTGAT GTCATCGGTC TTTCTGCCTG TCGGATTCAT GGAGGGGCCA
ACCGGGGTCT TCTACCGGCA GTTCGCCTTT ACTCTTGCGA CAGCGATCCT GATTTCTGCG
GTGAACGCGC TGACGCTCAG TCCGGCGCTC TGCGCGCTCT TTCTTGCCGC TCCTGCAGAT
GGAAGCAAGA AGAAGTACAT CATGTTCAAG GGGTTCGGTA CGCGGTTTTT CAGCGGCTTC
AATGCAGCGT TCTCCACTCT GACGGAGCGG TACATAAACA GCCTGCGTTT TCTGATCGAC
CACAAGTGGC TGAGCATCGG CGGTCTCGTC GCGGTGACGC TCCTGACCCT TTTCTTTTTC
AAAACCACGC CGACCGGCTT CATTCCGGAC GAGGATAACG GTTTTGCCAT GATCACCGTT
ACGCTTCCTC CCGGCGCCTC GCTCGAACGC ACCAACAAGG TGCTCAAGGA TGCGGACGCG
CTGCTGCACC GGGAGGAGAG CGTCGAGCGG GTGATCTCCG TATCGGGCGT GAACATCATA
TCGGGCGCCA ACACTCCTTC CGCAGGCATC ATGTTCGTTC AGCTCCGCGA GATTGCCGAG
CGGGGCAAGG TGAAGAATAT ACAGGATATT ACCGGCATGA TGAACCGGAA GCTTGCCATG
CTCACCGATG CATCGTTCTA TGTACTTACC CTGCCTACCG TACCGGGTTT CGGCAACGTG
AGCGGCGTGG AGTTCGTGCT GCAGGACAGG ACGGCCGGCA GTCTGCAGAA ATTCAACGAT
GTTTCCGGCG GCTTTATCGG CGCAATCATG CAGCGTCCGG AGTTCGCCTT TGCATTTACT
CCCTTCAATA CCGCCTATCC GCAGTACGAA CTGGTTGTCG ATGCAAGCCG GGCCGAGCAG
CTCGGCGTGA GCACGTCCGA TATCATGACC GTTATGCAGG GGCTCTACGG AGGCATGCAG
GCCTCCGATT TCAACCGTTT CGGAAGGTAT TACAGGGTTA TCATGCAGTC CGAAGCCGCA
GATCGTGACG ATCCTTCATC CCTGAACGGC GTATCGGTCA AGAACCGCTC GGGATCGATG
GTGCCCCTTA CCTCCGTAGC CTCCCTGAAA CGGGTGTACG GTCCTGAAAC GGTCGATCAT
TTCAACCTTT TCAATGCGAT CGGCATCACC GCCAATGTCA AGCCGGGATA CAGTACCGGT
CAGGCGATTA CCGCCATCGA GGAGGTCGCC GGCCAAACGC TTCCTGCAGG ATACAGTTAC
GACTGGAAAG GCATGAGCCG CGAGGAGACT GCGTCCGGGG GCAAGGCTGC GGCCATTTTC
GTGCTCTGTC TCGCATTCGT CTACTTCCTG CTTGCTGCGC AGTACGAAAG CTATATTCTG
CCTTTTGCGG TGATGTTCTC CATTCCGACC GGGCTGCTCG GCGTGTTTCT CGGCATCAAG
CTGGCGGGCA TCGACAACAA CATCTACGTC CAGGTGGCGA TTGTCATGCT TATCGGGCTT
CTGGCCAAAA ACGCCATTCT GATCGTCGAA TACTCGATTC AGCGTCGCAG GGCGGGAAAG
GATCTCGTGC TTTCGGCGCT CGAGGGATCG AGGGCCAGGC TTCGTCCCAT TCTCATGACC
TCATTCGCCT TCGTTGTGGG ACTGCTGCCG CTGCTCTGGG CTTCCGGGCC GTCGGCTCTC
GGCAACCACT CCATCGGCTG GGCCGCAGTT GGCGGCATGC TCAGCGGCGT ACTGCTCGGT
ATTTTCATCA TTCCGGTGCT GTTCGTGATC TTTCAGGCTC TCCAGGAGAG GATTTCCGGT
CCGGCTCACC GGATCGAGGT GGTCCATGCT CCGGTGCTCG AAGATGCGGA CGATACTCCT
GATTTTTAA
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| Protein sequence | MFEKFITRPV LATVVSIVLV ILGIVGMGRL PVTQFPDIAP PSVVVTAMYP GASAETIARS
VAPSLEEAIN GVENMTYMTS TSGNDGMLTI TVYFKLGTDA DQAAVNVQNR VSQAQSQLPS
AVIERGITTV KQQNSMIMVI SLISDSPNYD ETFLQNYAKI NLIPDIKRVP GVGQATVFGN
KDYSMRIWLK PQQLAAYSLT PAEVAAAIQS QNIEAAPGKF GEGSREAMEF IIKYRGKFNT
TEDFGNIVIR SGQDGMQLRL RDVARIELGS YDYTVNSKVD GHPSVTMAIY QAAGSNANAI
QTELQQVLDK ASESLPAGIS YAVPYSTKKS LDESIEQVIH TLLEAFALVF LVVFIFLQDF
RSTLIPAIAV PVAIVGTFFF MNLFGFSINL LTLFALVLAI GIVVDDAIVV VEAVHAKMEH
RGLSAAPATA SAMSEITGAI VSITLVMSSV FLPVGFMEGP TGVFYRQFAF TLATAILISA
VNALTLSPAL CALFLAAPAD GSKKKYIMFK GFGTRFFSGF NAAFSTLTER YINSLRFLID
HKWLSIGGLV AVTLLTLFFF KTTPTGFIPD EDNGFAMITV TLPPGASLER TNKVLKDADA
LLHREESVER VISVSGVNII SGANTPSAGI MFVQLREIAE RGKVKNIQDI TGMMNRKLAM
LTDASFYVLT LPTVPGFGNV SGVEFVLQDR TAGSLQKFND VSGGFIGAIM QRPEFAFAFT
PFNTAYPQYE LVVDASRAEQ LGVSTSDIMT VMQGLYGGMQ ASDFNRFGRY YRVIMQSEAA
DRDDPSSLNG VSVKNRSGSM VPLTSVASLK RVYGPETVDH FNLFNAIGIT ANVKPGYSTG
QAITAIEEVA GQTLPAGYSY DWKGMSREET ASGGKAAAIF VLCLAFVYFL LAAQYESYIL
PFAVMFSIPT GLLGVFLGIK LAGIDNNIYV QVAIVMLIGL LAKNAILIVE YSIQRRRAGK
DLVLSALEGS RARLRPILMT SFAFVVGLLP LLWASGPSAL GNHSIGWAAV GGMLSGVLLG
IFIIPVLFVI FQALQERISG PAHRIEVVHA PVLEDADDTP DF
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