Gene Clim_1406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1406 
Symbol 
ID6356177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand+ 
Start bp1511740 
End bp1512372 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content49% 
IMG OID642669017 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_001943445 
Protein GI189346916 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCCAT CCTCACCGTT TCTCTGTTTT ATTACCGATG AGTCCCGTTC TCCCATCATT 
CTTGCCCGAA AAGCACTTGA AGGGGGGGCT TCGATGATTC AGTTGCGCCA TAAAAGTGCT 
GACGGAGATC AGCTTTATCA TTGGTCAGTT GCAATACAGG CTCTCTGCAG AAAGCATAAG 
GCCATCTTTA TCGTAAATGA CAGAGTGGAT ATCGCGCTTG CAGCAGGAGC TGACGGTGTA 
CATCTTGGTC AGCAGGATCT GCCTGCAGAT GCCGCAAGAA AACTGCTCGG TAAGGACAGG 
ATTATGGGAA TATCTGTCTC TTCTCCCCTT GAGGCCTTGG CTGCAGAAAA AAACGGAGCG 
GACTATGTCG GGTTCGGCCA TATCTTTCCA ACCAGTTCAA AAGATAAAAA GAACACTCCT 
GTCGGCCCGG AGTCGATAGC GGATATCAAA GCCATAATAA CAATCCCGAT TATCGCCATA 
GGGGGAATAA CAGGATGCAA CGCACAGCTG CCGATCAGGG CCGGAGCTGC CGGAATTGCC 
GTTATCGCAG CTGTAAGCCG TGCTGCAGAC CCGGAAATAG CTGCCCGTGA ACTTGTCGGA 
ATCCTGCAAA AAAACATTGA ACACAATAGA TGA
 
Protein sequence
MIPSSPFLCF ITDESRSPII LARKALEGGA SMIQLRHKSA DGDQLYHWSV AIQALCRKHK 
AIFIVNDRVD IALAAGADGV HLGQQDLPAD AARKLLGKDR IMGISVSSPL EALAAEKNGA 
DYVGFGHIFP TSSKDKKNTP VGPESIADIK AIITIPIIAI GGITGCNAQL PIRAGAAGIA 
VIAAVSRAAD PEIAARELVG ILQKNIEHNR