Gene Clim_1235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1235 
Symbol 
ID6355336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp1333291 
End bp1333968 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content55% 
IMG OID642668851 
ProductABC transporter related 
Protein accessionYP_001943281 
Protein GI189346752 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCACC CGCTGCTTGA AATAAAAAAC CTCTCCTTCA CCTATGAAGG CGCATCCGTT 
CCCGTATTCG AGCGGCTCGA TCTTACCGTC GAAAGCGGAG CGTTCATTCT GATAAAAGGT 
ACGTCGGGAA CCGGGAAATC CACCCTTTTG CGTCTTGTCT GCCGCCTGAA CAAGCCTCAG 
GGCGGCTCCA TTCTGTTCAG GAACCGGGAT ATTACCCTCA TGCCGCCGGC AGAGCTTCGT 
TCGTCGATAA GTTATGTTGC CCAGGTGCCG CAATTGGTCG ATGCGCAGGT CGAAGAGAAT 
CTCCTGCTGC CTTTCGCCTT CAGGGTCAAC AAAAACAAAG CCTTGCCGAG ACCTGAAGAT 
CTCCGGGCGA TGCTCGACGA GTTCTATCTC GACGGCGTCA CCCTCGAGCA GTCTGCCCTG 
AAGCTTTCCG CCGGGCAGAA ACAGCGTCTG GCGATCATGC GCTCGATTCT GCAGCAGCCG 
GACATGATGC TGCTCGATGA ACCCACTTCG GCCCTCGATC CGGAAAGCGC GGCAATGGTC 
TTTTCTATCA CGGAACGGCT CAACACCGAG AGAAAAATGA CCATAATGAC CGTAACGCAC 
AGCGATTACC GCCCTGAAAC CCTCAACGGG CTGATTTACC GACTCGAAAA CCGAACCCTT 
ACACTCATGC CGGAATGA
 
Protein sequence
MNHPLLEIKN LSFTYEGASV PVFERLDLTV ESGAFILIKG TSGTGKSTLL RLVCRLNKPQ 
GGSILFRNRD ITLMPPAELR SSISYVAQVP QLVDAQVEEN LLLPFAFRVN KNKALPRPED 
LRAMLDEFYL DGVTLEQSAL KLSAGQKQRL AIMRSILQQP DMMLLDEPTS ALDPESAAMV 
FSITERLNTE RKMTIMTVTH SDYRPETLNG LIYRLENRTL TLMPE