Gene Clim_0896 details

Gene Information

• Locus tag: Clim_0896
• ID: 6354133
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 981344
• End bp: 983170
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 642668523
• Product: GTP-binding protein TypA
• Protein accession: YP_001942954
• Protein GI: 189346425
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0560855
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGA GACAAGATAT AAGAAATATA GCTATCATCG CGCACGTTGA TCATGGGAAA 
ACCACACTTG TGGATTCGAT TTTTCAGAAG ACGGGGGCGT TCAGGGATAA TCAGCAGGTC 
AATGTCCGGG TGCTTGATTC CAATCCCCAG GAACGGGAGC GCGGCATTAC TATTTTCTCA 
AAAAATGCGG CGGCACTCTA CAAGGATCAT AAAATCAATA TCGTTGACAC TCCGGGTCAT 
GCGGATTTCG GAGGTGAGGT AGAGCGGATT CTTAAAATGG TTGACGGAGT TCTCCTTCTT 
GTCGATGCAT TCGAAGGGCC GATGCCGCAG ACCAAATTCG TGCTGCGCAA GGCGCTTGAG 
CTTCACCTGA AGCCGATCGT GGTGATCAAC AAGATTGATC GTCCGCAGTC GGATCCCGTG 
AAGGTGCACG ATCAGGTACT CGACCTGTTT ATCGCGCTTG GTGCTGATGA GGACCAGCTC 
GATTTCCCAT ACCTGTTTAC CTCGGCAAAG CTTGGTGTTG CCAAATACAG CATGGATGAT 
GAAGATCAGG ATATGAGCCT GTTGCTCGAT CTGATCATCA AGGAAATTCC GCCTCCGGAC 
GGCGATGAGG ACGCCGGTTT CCAGATGCTT ATAACAAGTC TTGATTACAA CGATTATATC 
GGCAAGATTG CCATTGGTCG CATTCATCGC GGGAAAGTCA GTCCCGGTAG CCAGCTTGCC 
GTCGTCACCT CTGAAGGCGT TGTCGGCAAA GGAAGTGTTT CCAAGCTTTT CCTGTTCGAC 
AAACTGCAGC GAATCGAGGC AAAGGAGGCG TCAGCCGGCG ATATTATCGC CATTGCAGGT 
ATTCCCGAAG CCAATGTCGG CCATACGCTT GCAGCGGTTG ATACTCCTGA ACTGCTCGAG 
TCATTTGAGA TCAGCAAACC GACGCTTTCG ATGCTCTTTT CGGTAAATGA TTCTCCCTTT 
GCCGGTCTGG AGGGCAAAGA GGTGACAAGC CGCAAGATTC GTGAACGCCT CATGAAAGAG 
GTCATGACCA ATGTCGCGCT CTCCGTAGAA GAGACCGAAA GCGCAGATAC GTTTCGTGTT 
TCAGGAAGGG GAGAGCTTCA CCTGTCGGTG CTCATCGAGA CCATGCGCCG GGAAGGTTAT 
GAGCTTGCCA TTTCAAGGCC TGAAGTCATC ATGCACCATG ACGACGACGG CACGCTGCTT 
GAGCCGATCG AACATGTCAC CATAGATATT CCTGATGAAT ATACCGGTGT GATCATAGAA 
AAGATGGGTC GAAGAAAAGC TGAAATGACC CATATGGGCA CACTGCGCGG CGGTATGGTA 
CGCCTCGAAT TTGAAATTCC CACGAGAGGT CTGATCGGCT ATAATCTCGA GTTTACGACC 
GATACCAAAG GCGAGGGTAT TCTCTCCCAT GTGTTTTACA ACTATCAGCC GTTCAAAGGC 
AAGCTTCCGT CAAGAGAGAC GGGCGCTCTC GTCGTATCCG AAACCGGTGT TTGCGTTGCC 
TATGCACTGA GCAATCTCGA AGATCGCGGT ACTTTTTTCA TCGCACCCAA TACCAGGGTG 
TATGAAGGAA TGGTTGTCGG CGAGTCCACA AGGGGCCTCG ATATCACGCT CAATGTCTGC 
AAGACGAAAA AGCTATCCAA TATGCGTTCT TCCGGAACGG ATGAGTCGCT TCGTCTGACT 
CCTCCGAAAA TTCTTTCGAT GGAACAGGCT CTCGAATTTA TCAATGATGA TGAACTGCTT 
GAGGTGACTC CGCTGAGCAT CAGGCTCAGA AAGAAAATTC TCGACTCGAA CCTGAGGGCG 
AAGGCGACCA AAAAGGCAAA CGCCTGA 

 

Protein sequence

MSKRQDIRNI AIIAHVDHGK TTLVDSIFQK TGAFRDNQQV NVRVLDSNPQ ERERGITIFS 
KNAAALYKDH KINIVDTPGH ADFGGEVERI LKMVDGVLLL VDAFEGPMPQ TKFVLRKALE 
LHLKPIVVIN KIDRPQSDPV KVHDQVLDLF IALGADEDQL DFPYLFTSAK LGVAKYSMDD 
EDQDMSLLLD LIIKEIPPPD GDEDAGFQML ITSLDYNDYI GKIAIGRIHR GKVSPGSQLA 
VVTSEGVVGK GSVSKLFLFD KLQRIEAKEA SAGDIIAIAG IPEANVGHTL AAVDTPELLE 
SFEISKPTLS MLFSVNDSPF AGLEGKEVTS RKIRERLMKE VMTNVALSVE ETESADTFRV 
SGRGELHLSV LIETMRREGY ELAISRPEVI MHHDDDGTLL EPIEHVTIDI PDEYTGVIIE 
KMGRRKAEMT HMGTLRGGMV RLEFEIPTRG LIGYNLEFTT DTKGEGILSH VFYNYQPFKG 
KLPSRETGAL VVSETGVCVA YALSNLEDRG TFFIAPNTRV YEGMVVGEST RGLDITLNVC 
KTKKLSNMRS SGTDESLRLT PPKILSMEQA LEFINDDELL EVTPLSIRLR KKILDSNLRA 
KATKKANA