| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0770 |
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| Symbol | |
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| ID | 6356051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | - |
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| Start bp | 839888 |
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| End bp | 843238 |
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| Gene Length | 3351 bp |
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| Protein Length | 1116 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642668394 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001942829 |
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| Protein GI | 189346300 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGAAA ATAGGTTTTG TCCGACTCAT ATGAAAACGT TATCAGAAAC GAAGATCAGC
AGTATTCCGG TTGTAAAAAG AACTCCATCC TTTCTCTTCG ACACCCTAAG ACAGACTGAT
GCCTTTCGGC TCCTTAAAAA AAGACTGGAG CAAAACGCTT CCGGCAGTGC CGCACAGCTT
GATCCGATAG GGATAACCGG TATCAGCGGC TCCCTCGCGT CTCTGACAGC GGCCCTGCTG
TTTTTTGAAA CAGACTCGCC GATTCTGGTT ATCAGCGGAC CGGAAAATGA CGAACTTTTT
GAGAACGATT TCAATCTGCT GGTTCCTTCC GGTTCATTTT TCAGCGTTTA CGATCAGCTG
CCTCTTGCCA TGATGGCTCT TGCGGACGGC ACCTCCGTTC TCCTGCATGC ATCATTCAGC
GATCTGCAGC AGCCGCTCTG TTCACCGGAT GAAATCGGAA AAAAACTCTT CCGGCTTGAT
AGGGAAAAAG ATGCCGGATA TGAAAAGCTG AAAAATTTTC TCAGAGAAAA CCAGTTTGAA
CATCGGGAGT TCGTGGAGGA TGAGGGCGAA TTTTCCGTTC GCGGATCGAT TATCGATGTT
TTTTCCTTCG GATCACCCGA ACCGGTGCGG ATAGAGTTTT TTGGCGATAC CGTCACATCC
CTGCGAATAT TCGATATCAA CTCACAGCTT TCCGGAAAAA CAGTCGAGCA CATAACCGTA
ACGGGAAACT TCAGTCATGA AACCGGTTCC GGCAAAGAAA GTTACATGCT CGACTATCTT
CCGGAATCCG CAATCATCCT GATCGAAAGC ACATCGGAAC TGGGCATGCT GGATGATACC
GATTCTGCAA AGAAAGCCCT TTTTGCATTC CGTCAAATAC ATGTCTCTCC GGTTTCCTCC
GACGCAATTG ATTTCGGATC GCACCCCCAG AAAAAAATCA TGGCGAATTT CCGTCTGCTG
GCCGGTGAAC TGCAGAAAGC TGCCGCAGCC GGCAGGCAAC CTGTTTTCGC CTCTGCTTCA
AAACGGGAAA TCGACGAACT CGCAGAATTT CTTGGAGATG AACTGCGCGA AGCAACAGAA
ACTCACTCTC CCGACATTCA ATGGATCGCC ATCAATCTGC ATTCCGGATT TTCGTTCAGA
CATCTCGACA TCTACTCCGA GTCCGATATT TTCGGAAAGT TCCATACCCA CAGATCGCAC
AGAAAACGGA AAATCAAGGG AATCTCCCTG AAAGATCTGC ACCGTCTCAA AATCGGAGAT
TACGTTGTTC ATGAAGATTA TGGCATCGGG ATCTTCAAAT CCCTTGAAAC CATTACCGTC
GGCAATTCGG AGCAGGAGTG CGTGCTGGTG GAATATGAAG GGGGCGATCA GCTCTTTGTC
AATGTCCAGA ACATCAATCT GCTCTCGAAG TACACCGCTG CTGAAGGCGC TCTCCCCTCC
CTGTCGAAAC TCGGCAGCAG CAAATGGGCT GCAAAAAAAG AGAAGGTCAG AAAAAAAATA
AGGGACATCG CCATCAATCT CATCAGGCTT TATGCCGAGA GAACCATGAA GCCCGGCTTT
GCCTTCTGCG CCGACACGAT TTTCATGCGT GAGTTTGAAG CATCATTTAT TTTTGAGGAG
ACTCCTGATC AGCTCAAGGC GATTGAAGAG GTTAAAGCCG ATATGCAGAA GCCCCACCCC
ATGGATCGCC TGATATGCGG CGACGCCGGA TTCGGTAAAA CCGAAATCGC CATGCGGGCG
GCATTCAAGG CTGTTGAATC CCGAAAACAG GTGGCCATAC TCACCCCTAC CACCATTCTG
GCTCATCAGC ATCTGGAGTC GTTCGAAAGA CGATTTGCAA ATTTTCCGGT TTCCATTACC
GTGCTCAGCC GTTTCATACC AAAAAAAGAA CAGCTCGAAA GAATCGAAAA AATTGAAAAC
GGAGCAATCG ATATTGTCAT CGGCACCCAT CGGCTGGTCT CCAAAGATGT CCGTTTCAGG
GATCTCGGCC TGCTCATAAT CGATGAAGAA CAACACTTCG GGGTTGAAGT GAAGGAAAAA
CTGCGGGTGT CTCACCCTGA GGTGGATACT CTCACCATGT CTGCGACTCC GATACCGAGA
ACGCTGCAGT TCTCGATGCT GGGCGCAAGG GATCTCTCAA TTGTCTCAAC GCCTCCAAAA
AACCGCCAGC CTGTCGAAAC CTCCATTTCA GATTACGACC CGGTCCTCAT TCAGTTGGCA
ATCCAGCGTG AAATACAACG CGACGGACAG GTTTTTTTCC TGCACAACCG CATCAGCGGT
CTCGAAGAGA TTCAGCATAT ACTCAGGGAA CTTGTCCCCT ATGCAAGAAT CGTCTATGCG
CATGGCCAAA TGCCTTCAAA AGAGCTTGAA AAAGTCATGA TGGATTTCAT GCAGAAAGAG
GTGGATGTGC TCATTTCCAC ATCGATAATC GGTTCAGGTC TCGATATTTC CAATGCCAAC
ACCATCATCA TCAACAGAGC CGACATGTTC GGACTTGCCG ACCTCTACCA GCTCAGGGGA
AGAGTGGGCC GAAGCGAACG GAAAGCTTTC TGCTACATGA TCGCCCCACC CATTCATACA
TTGAAAAGGG AAGCCGTTCA ACGGCTTGCC GTTATTGAAA GTTTTACGGA ACTCGGAGCC
GGATTTACCG TAGCCCTTCG CGATCTCGAT ATACGGGGAG CCGGAAACCT CCTGGGAGCC
GAACAGTCCG GCTTCATTCA TGAACTGGGT TTCGACCTTT ACCAGAAAAT GCTTGAGGAG
ACCGTTGCCG AGCTGAAATC AACGCACTTC CGCGAACTTT TCTCCGAAAG CGGCAACACA
CCACTGAAAA CAGTTAAAAA CTGTGACCTG GTCTTTTTCT TCGACGCACT CATTCCCGAT
TACTTTATCA GCGCCGTCCA TGAGCGGTTC AGTTTCTATG AAAAAATATC GAAAGCCCGC
CGTGAAAGCG AACTGGACGC CATTGGCTCC GAACTTACAG ACCGGTTTGG AGAACTTCCC
GAAGAAGTAG TCAACATGCT CCTGCTCTCA AGACTTAAAA TCCGTGCTTC ATCGATCGGT
ATCGATAAAA TCGATATCCA GCAAGAAACA TTCACCATCT TCCTGCCCGA AAACGATCAG
GAAAACTTTG AACACAGGGC ATTTTTTCAG TCCCTTTTCA GTTCCGTTCA GCAGGAATGG
ATGATTCCGT TCAAACCGGG TTTCAGAATG GAGAAAAAAC TGAAACTGGT GCTGCACCAT
CCTGCCGGGA ACAGCTCCAG GCCCGCAGCT CTGCTTGGCA TCTATACCGA TCTTCTCAAA
CAGCTCGAAG AGGCGTCAAA AGCGTTGCCC GAAACTCCGG CGCTCCCCTG A
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| Protein sequence | MHENRFCPTH MKTLSETKIS SIPVVKRTPS FLFDTLRQTD AFRLLKKRLE QNASGSAAQL
DPIGITGISG SLASLTAALL FFETDSPILV ISGPENDELF ENDFNLLVPS GSFFSVYDQL
PLAMMALADG TSVLLHASFS DLQQPLCSPD EIGKKLFRLD REKDAGYEKL KNFLRENQFE
HREFVEDEGE FSVRGSIIDV FSFGSPEPVR IEFFGDTVTS LRIFDINSQL SGKTVEHITV
TGNFSHETGS GKESYMLDYL PESAIILIES TSELGMLDDT DSAKKALFAF RQIHVSPVSS
DAIDFGSHPQ KKIMANFRLL AGELQKAAAA GRQPVFASAS KREIDELAEF LGDELREATE
THSPDIQWIA INLHSGFSFR HLDIYSESDI FGKFHTHRSH RKRKIKGISL KDLHRLKIGD
YVVHEDYGIG IFKSLETITV GNSEQECVLV EYEGGDQLFV NVQNINLLSK YTAAEGALPS
LSKLGSSKWA AKKEKVRKKI RDIAINLIRL YAERTMKPGF AFCADTIFMR EFEASFIFEE
TPDQLKAIEE VKADMQKPHP MDRLICGDAG FGKTEIAMRA AFKAVESRKQ VAILTPTTIL
AHQHLESFER RFANFPVSIT VLSRFIPKKE QLERIEKIEN GAIDIVIGTH RLVSKDVRFR
DLGLLIIDEE QHFGVEVKEK LRVSHPEVDT LTMSATPIPR TLQFSMLGAR DLSIVSTPPK
NRQPVETSIS DYDPVLIQLA IQREIQRDGQ VFFLHNRISG LEEIQHILRE LVPYARIVYA
HGQMPSKELE KVMMDFMQKE VDVLISTSII GSGLDISNAN TIIINRADMF GLADLYQLRG
RVGRSERKAF CYMIAPPIHT LKREAVQRLA VIESFTELGA GFTVALRDLD IRGAGNLLGA
EQSGFIHELG FDLYQKMLEE TVAELKSTHF RELFSESGNT PLKTVKNCDL VFFFDALIPD
YFISAVHERF SFYEKISKAR RESELDAIGS ELTDRFGELP EEVVNMLLLS RLKIRASSIG
IDKIDIQQET FTIFLPENDQ ENFEHRAFFQ SLFSSVQQEW MIPFKPGFRM EKKLKLVLHH
PAGNSSRPAA LLGIYTDLLK QLEEASKALP ETPALP
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