Gene Clim_0352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0352 
Symbol 
ID6354346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp389931 
End bp391307 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content51% 
IMG OID642667982 
ProductRNA modification enzyme, MiaB family 
Protein accessionYP_001942424 
Protein GI189345895 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01579] MiaB-like tRNA modifying enzyme
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.135679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGACG CTCTGTATGC AAAGAGATCG CCGAGTGTTG CCGCCGTAAC GATGGGATGC 
AAGCTGAATT ATTCCGAAAC ATCAGCAATA CTCGATCGGC TTTCTGCCGA AGGGTGGAAA
CTCTCCTCTC TCGATGCAGG TGCGGATATG ATTATTATTC ATACCTGTTC AGTGACAAGT
CAGGCTGAAC AGAAATGCAG GCAGAAAATA AGGCGAATCA TTCGCAGGCA TCCGGAAAGC
GTTGTCGTCG TTATTGGCTG TTATGCGCAG CTGCAGCCGG CACTGCTTGC CGGTATCAAG
GGTGTTGCTG CTGTTCTGGG AAGCAGCGAC AAATTCGTGA CCGCTACCTA TCGGGAGCTT
CTGGATCAAA AACAGACATT CCCTCTTGCG CGAGTCTCGG ATATCGGCAG TACGGAGACG
GTTTTTCCGG GATATTCTCT TTCTGTAGAT GAGGGAGAAG CGCGGACAAG AGCTTTTTTG
AAAATTCAGG ATGGTTGCGA CTACGCTTGC GCATATTGCA CCATTCCGCA TGCACGAGGT
CGTTCCCGTT CACTTCCGTC CGAAGAGCTT GTTGCCCGTG CCCGCAGTCT TGCTTTTTCC
GGGTATCGTG AAATCGTTCT GACCGGGGTG AACATCGGCG ATTATCGCGG CCATGCATCC
GGACTCGTCG GTCTTTTACG GATGCTTGAA GATGTTTCTG TCGATCGTAT CAGGATCAGC
TCCCTTGAAC CGGATATTCT CGATGACGAA TTGATCGAAA CCGTAGCGGC ATCGAAAAAA
ATCACTCCGC ATTTCCATGT GCCGCTCCAG AGCGGATCCG ATTCCATATT GAAGGCCATG
CGTCGGAGGT ACACCACGGA ATCCTATCGG GAGAAACTTG TCCGTGCTGT TGGCGCTATT
TCCGATTGCG CAATCGGTGC GGATGTCATT GCCGGCTATC CCGGAGAGAG TGAAGAAGAT
TTCATGCAGA TGTACCGATT TATCGAGGGG CTGCCGATAG CCTATCTGCA TGTTTTCACC
TGTTCTGTTC GTCCTGGTAC CGTACTCGCA GCACAGCTTG CTGCCGATGA ACGCCGGTTA
CCATCGCCCG TGGAGCTTGA CAGAAGAAGT CGCCTGCTTA TAGAACTCGG AAAACGCAAG
ACGGAGGAGT ATTCAGGAAA ATTTATCGGG AGAGAGTGCG AGATTCTCGT TGAAGCGTCT
CTTCGCGAAA AGAGCGGAAG ACTGGTTTGC AGCGGCTATA CCGCTCATTA TCTTCATGTC
ACGGCAGAAG CGGGCTGTTT TGAAGGAAAT ACGGCGGATC TTAAGGGTCG CCTGTTGCCG
GTTCGCATTG CTCATATGGA CGACGATTTG AATTTACATG GCAGACTGTT ATTTTAA
 
Protein sequence
MDDALYAKRS PSVAAVTMGC KLNYSETSAI LDRLSAEGWK LSSLDAGADM IIIHTCSVTS 
QAEQKCRQKI RRIIRRHPES VVVVIGCYAQ LQPALLAGIK GVAAVLGSSD KFVTATYREL
LDQKQTFPLA RVSDIGSTET VFPGYSLSVD EGEARTRAFL KIQDGCDYAC AYCTIPHARG
RSRSLPSEEL VARARSLAFS GYREIVLTGV NIGDYRGHAS GLVGLLRMLE DVSVDRIRIS
SLEPDILDDE LIETVAASKK ITPHFHVPLQ SGSDSILKAM RRRYTTESYR EKLVRAVGAI
SDCAIGADVI AGYPGESEED FMQMYRFIEG LPIAYLHVFT CSVRPGTVLA AQLAADERRL
PSPVELDRRS RLLIELGKRK TEEYSGKFIG RECEILVEAS LREKSGRLVC SGYTAHYLHV
TAEAGCFEGN TADLKGRLLP VRIAHMDDDL NLHGRLLF