Gene Clim_0242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0242 
Symbol 
ID6354698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp271283 
End bp273475 
Gene Length2193 bp 
Protein Length730 aa 
Translation table11 
GC content52% 
IMG OID642667870 
Productpenicillin-binding protein, 1A family 
Protein accessionYP_001942316 
Protein GI189345787 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.13999e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGCCT TCGCGCTCAA TCCGTTCAAG GGCCTTCCGA GCCTTGAGGA ACTTGAAAAT 
CCAAATCCGG AACTCGCTTC GCTTGTCTAT TCCGAAGACG GCATCCTGCT GCACAAGTTT
TTTCTTAAAA ACCGCACGTT CATTCCGCTA AAATCCATCC CGAAATCGGC ACAGCACGCC
CTGATCGCCA CCGAGGACGT CTCGTTCTAC AGTCACTGGG GTATCGATCT CAGAAGACTC
GCTCTGGTGA TGGGTGAAAA TCTGATCAAG GGACGCAAAA GATGGCATGG CGCGAGCACC
ATTACCCAGC AGCTCGCAAA AAACCTCTAT CTGACCCAGG AACGGACGAT CAGCAGAAAA
GCCAAAGAGT TCATCACCGC TATCGAGCTG GAAAAAACCT ATACCAAGGA CGAAATTCTC
GCCCTCTACC TCAATACGGT TTATTTCGGT TCCGGAGCAT ACGGCATCGA GGCGGCATCG
AGAACCTATT TCGGCAAGCC GGCAAGCCAG CTGACGCTTC CGGAAAGCGC GACGCTCATT
GCAACCCTGA AAAACCCTAC CGGATACAAC CCGGTTAAAA ATCCTTCCAG CTCGATCGGC
AGAAGAAATC TTATTCTTTC GCTGATGGAA AAGGAAAAAT TCATTACCCC CGCACAGGCT
GCCGCAGCTA AAAAAACCCG CCTGATCCTG AAATTCACTC CGGTAAACCA TCACGGACTC
GCTCCCTATT TTACCGAGTA TATCCGCCAG ACCATCAAAC CGGCATCGAT GCTGGGCGAC
ATCAACGTTT ACCGAGACGG ACTCAGCATT CAGACGACAC TGGACAGCCG TATGCAGAAA
TATGCCGAGC AGGCTGTCCG GGAACACCTG TCGTCACTGC AGGCGGCATT CGATCGTTCA
TGGAGATGGC CTGAATCGCT TAAAAATCAG ATCATTAAAG AGAGCGCCCG GTTCAAGGAA
CTCCGTGAAG ACGGGCTTAC CGAACAGTCA GCCATGGCGA AACTGAAAGC CGACAGGGTA
TGGCTGAACA ATTTGCTGAA GGAAAAAACA AGGATACAGG TAGGATTTGT CGTCATCGAC
CCATCCAACG GACACGTCAA AGCCTGGGTG GGCGGCAATA ATTTCTCTCC CGACGATTAC
CGATATCAGT TCGACCATGT ATGGCAGGCA AAACGACAGC CCGGCTCGAC CTTCAAGCCG
TTTGTCTATA CTGCGGCCAT CGATAAAGGC ATTCCGGCCA ATTTCAGGGT GCTCAACCAG
CCTGTGGCCC TGAGAAGCGG CAGCGGAATC TGGTCGCCGA GAAACTCCGA CGGCTCTTCC
GGCGGACTGA CTACCCTTCG GTCGGCATTG AGCCGCTCGA TGAACCAGGT TACGGTACGT
CTTGCTTACG AACAGCTCAA AGTGCCGGAA ATCATCAGTT ACGCAAGAAG GATGGGAATC
TCTTCCCCGA TTCCCTCAAA CCTTTCCATT GTGCTCGGCA CCGCGGAAGT TACGCCGCTT
GAACTTGCCG GCGCTTTTGC AACCTATGCC AATAACGGCA TCTGGAACGA ACCGGTCTCG
ATTCTGAAGG TTGAAGACAA GCATAACCGG GTTATTTCTG AATACCGTCC GAACAGTCGC
TTTGCCATCG ACTCCACATC GAACTTTGTC ATGGTTTCCA TGCTCAAGGA TGTCGTCAAC
AAAGGTACCG GTATTGCGCT CAGAGCCCGT TACGGTTTCG ATTACGAAGC TGCAGGAAAA
ACCGGCACAA CCCAGAGCAT GCGTGACGCA TGGTTCGCCG GATTTACCCC CCAGCTCGCC
GCCGTCGTCT GGACAGGATT TGACGATGAA CGGGTCAAGT TCACCTCGAT GGAGTACGGC
CAGGGAGCAA GAGCTGCCCT TCCGATATGG GCGCTGTTCA TGAAAAGCGC TTACAGCGAT
CCAACGCTGA AGCTTGAGAA CCGCTATTTC CACATTCCTG ATAACGTGAT AGCCGTCCCG
ATTGCCGGGA ATACCAATAC GCCGTCGGAC TTGATGGGCA GTGACGTGTA TATTGAATAC
TATACGCCGA AAGGATTTAA TTATTATAAA TCACAGCCGG TACGTTCTTA TCAGTCAACC
ACGGAAGAAT CGGATGATGC TTCCGGCAGC GGAGAATCGG CGGAACCTCA GCCGCCCCCT
TCAGAAGAAT CTGCAGGAGA AGGGATTTTC TGA
 
Protein sequence
MSAFALNPFK GLPSLEELEN PNPELASLVY SEDGILLHKF FLKNRTFIPL KSIPKSAQHA 
LIATEDVSFY SHWGIDLRRL ALVMGENLIK GRKRWHGAST ITQQLAKNLY LTQERTISRK
AKEFITAIEL EKTYTKDEIL ALYLNTVYFG SGAYGIEAAS RTYFGKPASQ LTLPESATLI
ATLKNPTGYN PVKNPSSSIG RRNLILSLME KEKFITPAQA AAAKKTRLIL KFTPVNHHGL
APYFTEYIRQ TIKPASMLGD INVYRDGLSI QTTLDSRMQK YAEQAVREHL SSLQAAFDRS
WRWPESLKNQ IIKESARFKE LREDGLTEQS AMAKLKADRV WLNNLLKEKT RIQVGFVVID
PSNGHVKAWV GGNNFSPDDY RYQFDHVWQA KRQPGSTFKP FVYTAAIDKG IPANFRVLNQ
PVALRSGSGI WSPRNSDGSS GGLTTLRSAL SRSMNQVTVR LAYEQLKVPE IISYARRMGI
SSPIPSNLSI VLGTAEVTPL ELAGAFATYA NNGIWNEPVS ILKVEDKHNR VISEYRPNSR
FAIDSTSNFV MVSMLKDVVN KGTGIALRAR YGFDYEAAGK TGTTQSMRDA WFAGFTPQLA
AVVWTGFDDE RVKFTSMEYG QGARAALPIW ALFMKSAYSD PTLKLENRYF HIPDNVIAVP
IAGNTNTPSD LMGSDVYIEY YTPKGFNYYK SQPVRSYQST TEESDDASGS GESAEPQPPP
SEESAGEGIF