| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0196 |
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| Symbol | rpoB |
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| ID | 6354652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | + |
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| Start bp | 214117 |
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| End bp | 218055 |
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| Gene Length | 3939 bp |
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| Protein Length | 1312 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642667828 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001942274 |
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| Protein GI | 189345745 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTTG ATAAAAGCGA GGTGCATGTG AAAGTGGCTG ATGCAACACC AACACCGTCT
ATTGACTTTT CCAAAATACA AAGCATTATC GATCCCCCCG ATTTATTAAA AGTTCAGTTA
GATTCATTTC ATAATTTTAT TCAGGACAGC GTTCCTCTTG CAAAGCGCAA GGACCAGGGG
CTCGAAAGGG TTCTTCGCAA CGCTTTTCCC ATAACCGATA CTCGCGGGCT GTATTTGCTC
GAATATATCT CCTATAGTTT CGACAAGCCT AAATATACCG TTGAGGACTG TATCGAGAGA
GGGCTTACCT ACGATGTTTC GCTCAAGGTA AAACTCAAAC TTTCGTATAA GGATGAGCCG
GATGAGCAGG ACTGGAAGGA GACCATCCAG CAGGAAGTTT ATCTTGGCAG GATTCCCTAC
ATGACCGAGC GGGGTACCTT TATCGTCAAC GGCGCCGAAC GTGTCGTCGT TGCTCAGCTG
CACCGTTCTC CGGGGGTTGT GTTCAGTGAA GCTGTGCATC CGAACGGCAA GAAAATGTAT
TCGGCAAAAA TCGTCCCCAC AAGAGGTTCG TGGATCGAGT TTCAGACCGA TATCAATAAC
CAGATTTTCG TTTATATCGA CCAGAAAAAG AACTTTCTGG TGAGTGCTCT TCTTCGGGCT
ATCGGATTCG CGAAAGATGA GGACATACTC GGTCTTTTCG ATCTTGTCGA AGAGATCAAA
ATGAGCGCCG GAAAGAAAGA CCAGCTGATC GGCAAGTATC TCGCTTCTGA TATCGTCGAT
ATGCAGACAG GCGAGGTCGT CAGCGCCAGA ACCGCTATCA CCGAAGATAT CTTCGAACAG
ATTCTTGCAG CCGGTTACAA GGCTGTCAAG GTCATGAAGA GCTATTCCGG CAGCGACAAA
GGTCAGGACA AGTCCATTAT TATCAACACC ATTCTCAACG ACAGCTCTGC TACCGAAGAG
GAGGCGCTCG AGATCGTGTA CGAGGAACTG AGGGCCAATG AAGCTCCTGA TATCGATGCA
GCACGAAGCT TCCTTGAAAG GACGTTCTTC AATCAGAAGA AATACGACCT CGGAGATGTC
GGTCGATACA GGATCAGAAA AAAGCTGGCC AGGGAGTTCG AAGAACTGGT GACCTATCTC
TCGGGGAAAA AAGAGCTCAG AGAGCTTTCA GACGGTATTT ATCAGAAGAT TCTGCAGACT
ATCCAGTCAT TTTCGGATGA GCCGGTCGGA GACGATATCC TCGTACTGAC GCATTTCGAT
ATCATTGCGG TTATCAATTA TCTGATCAAG CTTGTCAACG GCCAGGCAGA GGTTGACGAT
GTCGATCACC TTGCAAATCG CCGTGTCCGC TCCGTAGGCG AACAGCTTGC CGCACAGTTT
GTCGTAGGTC TGGCAAGGAT GGGCAAGAAC GTCCGGGAAA AACTCAATTC ACGCGACTCC
GACAAGATCG CTCCGGCGGA TCTTATCAAT GCCCGTACGG TATCGAGTGT GGTTTCGAGT
TTCTTTGCCA CAAGCCAGTT GTCGCAGTTC ATGGACCAGA CCAATCCGCT TGCCGAGATG
ACCAACAAGC GCAGGGTTTC CGCTCTCGGA CCCGGAGGTC TTACCCGTGA GCGTGCAGGT
TTCGAGGTTC GTGACGTTCA CTACACCCAT TATGGAAGGC TTTGTCCTAT CGAGACTCCT
GAAGGTCCGA ACATCGGTCT GATTTCATCG CTCTCTGTCT ATGCGGAAAT CAACGATAAA
GGATTCATTC AGACTCCTTA CAGAGTGGTT GAAAAGGGAC AGGTTACCGA CAAGGTCGTT
ATGCTTTCGG CTGAAGATGA AGAGAACAAG ATAACCGTAC CGGTTAGCGT TCCGCTTGAC
GAAAACAGGA AAATCGCTCT CGAATCGGTT CAGGCAAGGA CCAAGGGTGA CTATCCGCTT
GTCCCCGCCG AGGACGTCAA TTATATGGAC GTTTCTCCGG TTCAGATTGT CAGTGCCGCT
GCGGCATTGA TTCCTTTTCT TGAGCATGAT GACGGCAACC GTGCCCTTAT GGGCGCAAAC
ATGCAGCGTC AGGCAGTTCC ACTCCTGACC TCGGAGGCTC CTGTCGTCGG TACCGGCATG
GAAGCGAAGG TCGCTCGTGA TTCACGATCG GTTATTGTTG CCGAAGAAGC CGGAACGGTG
GAAGAGGTTA CTGCGGACTA CATCCGGGTC AGGTACGATA TCGATACTGA AAATGAAGTG
CATCTCTCGA TGCTCGATCC GGATGAAGGC CTGAAAACAT ACAAGCTCAT CAAGTTCAAG
CGATCTAACC AGGACACCTG TATTTCGCAG AAATCGCTCG TTCGCACTGC ACAGCGGGTT
GCCAAGGGCG ATGTGCTTGC AGACAGCTCC TCAACGGAAA ACGGTGAGCT TGCACTTGGA
AAAAATGTGC TGGTTGCCTT CATGCCGTGG CGAGGATACA ACTTCGAGGA TGCCATCATT
CTGAGTGAGC GTCTTGTCTA TGACGATGTA TTCACCTCGA TTCACATTCA CGAATTTGAG
GCAAACGTAC GCGATACCAA GCGTGGTGAG GAGCAGTTCA CCCGTGACAT ATACAATGTC
AGTGAAGATG CCCTCAGAAA CCTTGATGAA AACGGTATTG TGCGTATCGG TGCCGAAGTC
AAGGAGCGCG ATATTCTTGT TGGTAAAATC ACCCCGAAAG GCGAAAGCGA TCCTACCCCC
GAAGAGAAAC TGCTCCGGGC AATTTTCGGC GACAAGTCAA GCGATGTCAA GGATGCCTCG
ATGCACGTTC CTGCCGGAAT GAAAGGCATT GTGATCAAGA CAAAACTTTT CAGTCGCAAG
AAAAAAGTGG GACTTGACGT CAAGGATCGT ATAGAGGCCG TGGACAAGCG GTATGACCAG
AAAGAGTATG ACCTGCGCAA GCGTTTCGCC AAGTGGCTGA ACCAGCTGCT CGACGGCAAA
AAGACGACAG GTATTTTCAA TGAAAAAGGA AAAGTGCTCG TAGCGGAAGG TTCGGTTTTC
GATGAAAGTG TGCTTGCCCG TTTCAGTGGG CTTCCCTTTC TCGAATCAAT CGATTTTTCC
AAAGGGCTTG TCGAATCGAA AAAAGTCAAT GAAAACGTTG TCCGTCTTGT CAAGGAGTTT
CGTTTCAAAC TCAAGGATAT TGCAGATGAG AGGGAAAACG AAAAGTACAA GATAAATGTC
GGCGACGAAC TGCCTCCCGG TATAGAAGAG CTTGCAAAGG TTTATATCGC ACAGAAGCGC
AAGATTCAGG TAGGCGACAA GATGGCCGGT CGTCACGGTA ACAAGGGTGT AGTCGGCAAG
ATTCTCTCGA TTGAGGATAT GCCGTTTATG GAAGATGGCA CGCCGGTTGA TATCGTGCTC
AATCCGCTGG GCGTTCCGAG TCGTATGAAT ATCGGCCAGT TGTACGAAAC GTCACTCGGA
TGGGCGGCAA AAAAACTTGG AGTCAAATTC AAGACTCCGA TTTTCAATGG AGCGACCTAT
GAAGAGGTCC AGAACGAACT TGAAAGAGCC GGCCTTCCAA TGCACGGCAA GGTCTCTCTG
TTTGACGGTC GTACCGGTGA GAAATTCGAT GACGAGGTGA CGGTTGGCTA TATCTATATG
CTGAAGCTGA GCCACCTTGT GGATGACAAG ATTCATGCCC GTTCAACCGG CCCATACTCG
CTTATAACGC AGCAGCCTCT TGGCGGTAAA GCGCAGTTCG GTGGCCAGAG ATTCGGTGAA
ATGGAGGTTT GGGCGCTTGA GGCCTATGGG GCCGCCAATA TTCTCAGAGA GATGCTGACG
GTCAAGTCGG ACGATGTTAT CGGTCGTAAC AAAACCTATG AGGCGATTGT CAAGGGCCAG
AATCTGCCAG AACCGGGCAC TCCGGAGTCG TTCAACGTTC TGGTACGGGA GCTTCAGGGT
CTCGGACTTG AAATTCGCAT CGACGAGAGG GTTCCTTAG
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| Protein sequence | MQFDKSEVHV KVADATPTPS IDFSKIQSII DPPDLLKVQL DSFHNFIQDS VPLAKRKDQG
LERVLRNAFP ITDTRGLYLL EYISYSFDKP KYTVEDCIER GLTYDVSLKV KLKLSYKDEP
DEQDWKETIQ QEVYLGRIPY MTERGTFIVN GAERVVVAQL HRSPGVVFSE AVHPNGKKMY
SAKIVPTRGS WIEFQTDINN QIFVYIDQKK NFLVSALLRA IGFAKDEDIL GLFDLVEEIK
MSAGKKDQLI GKYLASDIVD MQTGEVVSAR TAITEDIFEQ ILAAGYKAVK VMKSYSGSDK
GQDKSIIINT ILNDSSATEE EALEIVYEEL RANEAPDIDA ARSFLERTFF NQKKYDLGDV
GRYRIRKKLA REFEELVTYL SGKKELRELS DGIYQKILQT IQSFSDEPVG DDILVLTHFD
IIAVINYLIK LVNGQAEVDD VDHLANRRVR SVGEQLAAQF VVGLARMGKN VREKLNSRDS
DKIAPADLIN ARTVSSVVSS FFATSQLSQF MDQTNPLAEM TNKRRVSALG PGGLTRERAG
FEVRDVHYTH YGRLCPIETP EGPNIGLISS LSVYAEINDK GFIQTPYRVV EKGQVTDKVV
MLSAEDEENK ITVPVSVPLD ENRKIALESV QARTKGDYPL VPAEDVNYMD VSPVQIVSAA
AALIPFLEHD DGNRALMGAN MQRQAVPLLT SEAPVVGTGM EAKVARDSRS VIVAEEAGTV
EEVTADYIRV RYDIDTENEV HLSMLDPDEG LKTYKLIKFK RSNQDTCISQ KSLVRTAQRV
AKGDVLADSS STENGELALG KNVLVAFMPW RGYNFEDAII LSERLVYDDV FTSIHIHEFE
ANVRDTKRGE EQFTRDIYNV SEDALRNLDE NGIVRIGAEV KERDILVGKI TPKGESDPTP
EEKLLRAIFG DKSSDVKDAS MHVPAGMKGI VIKTKLFSRK KKVGLDVKDR IEAVDKRYDQ
KEYDLRKRFA KWLNQLLDGK KTTGIFNEKG KVLVAEGSVF DESVLARFSG LPFLESIDFS
KGLVESKKVN ENVVRLVKEF RFKLKDIADE RENEKYKINV GDELPPGIEE LAKVYIAQKR
KIQVGDKMAG RHGNKGVVGK ILSIEDMPFM EDGTPVDIVL NPLGVPSRMN IGQLYETSLG
WAAKKLGVKF KTPIFNGATY EEVQNELERA GLPMHGKVSL FDGRTGEKFD DEVTVGYIYM
LKLSHLVDDK IHARSTGPYS LITQQPLGGK AQFGGQRFGE MEVWALEAYG AANILREMLT
VKSDDVIGRN KTYEAIVKGQ NLPEPGTPES FNVLVRELQG LGLEIRIDER VP
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