Gene Clim_0096 details

Gene Information

• Locus tag: Clim_0096
• ID: 6355620
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 102824
• End bp: 103399
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 642667720
• Product: TPR repeat-containing protein
• Protein accession: YP_001942181
• Protein GI: 189345652

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.00110052
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCATA CAAGAACAAG TGCCCTGCTG TTTTCCGTTA CAGCTATCCT GCTGCTTTTT 
GCAAGCGCCA CTGCTGCCGG CGGGCAGGAA AACGATTATT TCAACAGAGG ATATGAAAAA 
CACCTGCAGG GAGATATCAA GGCGGCAATG AAGGATTACT CCTCGGCGAT TGAAATAAAT 
CCCCGATTTG CCATGGCTTA CCAGATGAGA GGAGCCGTCT GGCAGAGAAT GAAAATGTAC 
GACAAAGCCA TCAATGACTA TTCCATGGTG GTCGTTTTCG GTGAAACCTA TTTTAAGGCC 
GTCGGTTACT ACAACCGCGG GATCGTAAAA AATATGGCCG GTGATTTCTT CGGAGCGATT 
GCCGATTTTA ACGAGGCACT GAACATCGAC AAGAGAATGG TGGCGGCTTA TTTTCACCGC 
GGCATTGCCA AAAGCCGGAC AGGAGACTCT TTCGGCCGAA TCCAGGACTT CCGGGAAGCG 
GCAAGGCTCG GCGATGTCAA TGCCGAAAAG TGGCTGAACA CCTACTATCC CACCTGGAAA 
CAGCCGGTAG CTTCTGCTTT GCCTCAGACT AACTGA 

 

Protein sequence

MMHTRTSALL FSVTAILLLF ASATAAGGQE NDYFNRGYEK HLQGDIKAAM KDYSSAIEIN 
PRFAMAYQMR GAVWQRMKMY DKAINDYSMV VVFGETYFKA VGYYNRGIVK NMAGDFFGAI 
ADFNEALNID KRMVAAYFHR GIAKSRTGDS FGRIQDFREA ARLGDVNAEK WLNTYYPTWK 
QPVASALPQT N