| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0087 |
|---|
| Symbol | |
|---|
| ID | 6355611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 93045 |
|---|
| End bp | 95129 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642667711 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001942172 |
|---|
| Protein GI | 189345643 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.4836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATA ACCTGTTCAA ACCATCAAAT CCTTACAGAA AAGAACCGGA AACCAACGAA
CGACGCCCGA AATTTTCCAT AATGTACTAT CTGGTGGTGA TTCTGCTGCT GATAGGCATA
CAGCTTGCTT TTTTCTGGTC CGGCTCATCG GTGGAAATCC CCTATAGCAC CTTTCGCAAA
TACATTGCAG AAAACAAGGT CGAATCGGTG AGAATATCTC CCGAGAGAAT CTTCGTCGTG
CTCAAACCCG AGGCAAAACC TGTCGTGACT GCGCCCGAAC CTCCTAAAGA CGGCCCGGGA
ATATTTATGC CCCGTTCGTC AACGCCGTCC AACGAGATCT TCGTCACCCC GGTACGAGAT
GATACGCTCG TCGAGCTGCT CGAAAGCAAG GGCATAAAAT ATCAGGGCAT GCCGAGCAAC
ACCTGGCTGG GCGAACTGCT GCAGTGGATA CTTCCGTTCG CCTTGCTGAT AGGCATCTAT
TTTTTTGTTT TCCGGCGTAT GGGCGGACCT GGATCGCAGT TCATGAACAT CGGCAAAAAC
AAAGCCGCGC TTTATGAAAA CCTCGACGAA CACACCCGCA TCACCTTCAA GGATGTAGCC
GGACTCGACG AAGTAAAAGC TGAGGTCATG GAGGTCGTCG ACTTCCTGAA AGACCCGAAA
AAATATACAA AACTCGGCGG CAAGCTGCCC AAAGGCGTAC TGCTGGTAGG CCCTCCCGGT
ACTGGCAAAA CCCTTCTGGC CAAAGCCGTT GCCGGCGAGG CGGAAGTGCC GTTCTTCAGC
ATCAGCGGTT CCGACTTCGT GGAAATGTTT GTGGGCGTCG GAGCGGCAAG AGTGCGCGAC
CTGTTCCGCC AGGCAAAAGA GAAAGCCCCC TGCATCATTT TTATCGATGA AATAGACGCC
GTAGGCAGAA GTCGAGGCAA AGGCGCCATG ATGGGAGCGA ACGACGAGCG GGAAAACACG
CTCAATCAGC TTCTGGTGGA AATGGACGGC TTTGCTACCG ACAAGGGGGT CATCCTCATG
GCGGCGACCA ACCGGCCCGA TGTGCTTGAC TCGGCCCTGC TGCGTCCCGG ACGCTTCGAC
CGCCAGATCA TGGTCGACAA GCCCGATCTG AAAGGCCGTA TCGATATTTT CAAGGTGCAC
ACCAAGAACC TCTCGCTCTC TCCGGATGTA AACCTGAAAA CGCTTGCCTC GCAGACTCCC
GGTTTTGCCG GTGCGGAAAT CGCCAATGCC GCCAATGAAG CCGCCCTGCT TGCCTCGCGC
CGCGAAAAGC AGAGCATCGA AATGAAAGAC TTCGAAGATG CCATCGAACG TGTGGTAGCA
GGACTTGAAA AGAAAAACAA GGTCATCAAC CCGCGCGAAA GGCAGATAGT CGCCTACCAT
GAAGCCGGCC ACGCCATTGT GAGCTGGATG ATGCCCGAAA ACGATCCGGT ACAGAAAATT
TCGATCGTTC CGCGAGGTAT GAGCGCGCTC GGCTACACCA TGAACATTCC GCTTGAAGAC
CGTTACCTCA TGACGAAAAG GGAACTCTTC GCTCGAATCT GCGGCCTGCT TGGCGGACGC
ATTGCCGAGG AGATCATCTT CAGCGAAATA TCAACCGGCG CGCAGAACGA CCTTGAAAAA
ATTACCGGAA TAGCCTATAA CATGGTGCTG GTTTACGGCA TGAGCGAACG GCTCGGCAAC
CTCTCCTTCT ATGAGAGCAA CAATCCCTAT TCGGGCGGAC CAGGCATCGA CAAGAAGTAC
AGCGAGAAAA CCGCTCAACT GATCGACAGC GAGGTCAAGG TCATCGAGGA AAAAGCCCGC
CAGACGGTAA CCGATCTGCT GACGCTCAAT CGCGACAAGC TCGAGGCTCT CGCACGCGAG
CTTCTGGCCA AAGAGATGCT GCAGTACTGC CAGATCGAGG AAATTCTCGG CAAACGTCCT
GAGGGAGGAT TCCCCGCTCA TCTGCATACG GAGTGCAACG GAAACGGAAC CCGTCAGGAA
ACCGCTGAAG AGCCGGAGAT CCCGGTCATA AGCAGTGAAG AACGTCTTGA ACTCGAAGCC
GCCGTTGCAC GGCTGAAGGA AAACCGGGAA CAACCGGAAA CCTGA
|
|---|
| Protein sequence | MANNLFKPSN PYRKEPETNE RRPKFSIMYY LVVILLLIGI QLAFFWSGSS VEIPYSTFRK
YIAENKVESV RISPERIFVV LKPEAKPVVT APEPPKDGPG IFMPRSSTPS NEIFVTPVRD
DTLVELLESK GIKYQGMPSN TWLGELLQWI LPFALLIGIY FFVFRRMGGP GSQFMNIGKN
KAALYENLDE HTRITFKDVA GLDEVKAEVM EVVDFLKDPK KYTKLGGKLP KGVLLVGPPG
TGKTLLAKAV AGEAEVPFFS ISGSDFVEMF VGVGAARVRD LFRQAKEKAP CIIFIDEIDA
VGRSRGKGAM MGANDERENT LNQLLVEMDG FATDKGVILM AATNRPDVLD SALLRPGRFD
RQIMVDKPDL KGRIDIFKVH TKNLSLSPDV NLKTLASQTP GFAGAEIANA ANEAALLASR
REKQSIEMKD FEDAIERVVA GLEKKNKVIN PRERQIVAYH EAGHAIVSWM MPENDPVQKI
SIVPRGMSAL GYTMNIPLED RYLMTKRELF ARICGLLGGR IAEEIIFSEI STGAQNDLEK
ITGIAYNMVL VYGMSERLGN LSFYESNNPY SGGPGIDKKY SEKTAQLIDS EVKVIEEKAR
QTVTDLLTLN RDKLEALARE LLAKEMLQYC QIEEILGKRP EGGFPAHLHT ECNGNGTRQE
TAEEPEIPVI SSEERLELEA AVARLKENRE QPET
|
|---|
| |