Gene Clim_0085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0085 
Symbol 
ID6355608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp91293 
End bp92441 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content57% 
IMG OID642667708 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001942170 
Protein GI189345641 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.140142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAT TATCCATTCT CGGCAGTACC GGCTCAATCG GGCTCAGCAC TCTTGATGTT 
GTCAGGCAGC ACCCTGGAAA ATTTACGATT ACCGGATTAG CGGAAGGTCA TGATGTCGGA 
CTGCTTAACG AGCAGATCAA TGAATTCAGG CCGGACGTGG TTTCGGTAAG AGATGCGGCT 
TCAGCCGATC AACTCCGCAA GCTCCTCGGT ACGCATAAAC CGGAAATCTT CTATGGCATA 
GAAGGCGCTG CGACCGTAGC TGCCGCCGAA GGAGCCGAGA TGGTCGTTTC GGCCATTGTC 
GGTGCCGCAG GGCTGGTGCC CACCGTAAGC GCAATAAAAG CGGGCAAGCA TATCGCCCTG 
GCCAACAAGG AGACCCTTGT CGTTGCAGGA CAGCTGGTTT CCGATCTGGT CAAGAAACAC 
AACGTCCAGC TGCTGCCGGT GGACAGCGAA CACTCGGCAA TCTTCCAGTC GCTTGCCGGT 
CACAGAACCG AGGACATCGA GCGAATCATC CTTACCGCAT CCGGCGGCCC GTTCCGCAAA 
ACCCCTGCCG AAGAGCTGAA GCTTGCCGGT CCTGAACAGG CGCTCAAGCA TCCGCAGTGG 
ACGATGGGCG CAAAAATCAC CATCGATTCT GCAACGCTCA TGAACAAAGG TCTTGAGGTT 
ATCGAAGCCC ACTGGCTCTT CAATATGCCG GCGGAAAAAA TCGGAGTAGT GGTCCACCCG 
CAGAGCATCA TCCACTCGAT GGTGGAGTAT ATCGACGGCT GCGTGATGGC GCAGATGGGA 
GTGCCCGACA TGCGGGCCCC GATAGCCTAC GCTCTTGCAT GGCCGGAACG GTGCGGAACC 
GGCATCGGCA AACTCGACCT GGCAAAAATC GGAACGCTGA CCTTCGAAGA GCCCGATATG 
GAACGGTTCC CTGCCCTCCG TCTGGCATTC GATGCCCTGA AAGCGGGCCG TACCTATCCG 
GCAGTGCTGA ACGCCGCAAA TGAAATCGCC GTAGCGGCGT TCCTCGATAA AAAAATCGGC 
TTTACCGACA TCGCCGATAC CGTCGACAAA ACCATGCAGG CTCACGAAGC CTATGCTCCG 
GTTGAACTCG ACGAATACCT GCAGGCCGAC CGCTGGGCCC GCGAAAAGGC CAGAGAGATC 
ATAGGATAA
 
Protein sequence
MKALSILGST GSIGLSTLDV VRQHPGKFTI TGLAEGHDVG LLNEQINEFR PDVVSVRDAA 
SADQLRKLLG THKPEIFYGI EGAATVAAAE GAEMVVSAIV GAAGLVPTVS AIKAGKHIAL 
ANKETLVVAG QLVSDLVKKH NVQLLPVDSE HSAIFQSLAG HRTEDIERII LTASGGPFRK 
TPAEELKLAG PEQALKHPQW TMGAKITIDS ATLMNKGLEV IEAHWLFNMP AEKIGVVVHP 
QSIIHSMVEY IDGCVMAQMG VPDMRAPIAY ALAWPERCGT GIGKLDLAKI GTLTFEEPDM 
ERFPALRLAF DALKAGRTYP AVLNAANEIA VAAFLDKKIG FTDIADTVDK TMQAHEAYAP 
VELDEYLQAD RWAREKAREI IG