Gene Clim_0013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0013 
SymbolsecF 
ID6354927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp15393 
End bp16328 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content51% 
IMG OID642667637 
Productpreprotein translocase subunit SecF 
Protein accessionYP_001942100 
Protein GI189345571 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0341] Preprotein translocase subunit SecF 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.158e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGATTT TTCATAAAAC CAGCTTTAAT TTTATCAAGC ACCGTAAAAT AGCCTACGTT 
ATTTCCATGG TGCTTCTGTT GTCAGGTATT GTCTCCCTTG CCTTCAGGGG GCTTAATTAC
GGGATAGATT TCAGGGGCGG TTCCGAGGTG GTGATACGCT TCGAAAAAAA CGTGGAAGTC
GGCAGCGTAA GAGCTGTACT CAAGGAGGCC GGAGTTTCCG GAACCCTGAA GCAGTACGGC
ATCGACCGTT CGTTTCTGCT CAGTACGGTG TTCAGCGGTC AGACCAATGA ACTGAAAGCG
CTTGTTTCCA ACGCTTTCAA TGCACGCTTT CCTGATAATC GCCATGAAAT CGTGCGTATT
GATTCCGTCG GGCCGAGCAT CGCTTCAGAC CTGAAATGGT CGGCGCTCAA GGCATTACTC
GGCGCCCTTG CGGCAATTCT GCTCTATGTG GGTATCCGGT TCGAGCTTAA ATTCGCCGCT
GCCGGCGTTG TCGCCATTTT TCACGATGTG CTTACGGTGC TCGGTCTGTT CAGCATTCTC
GGGGGACTTT TCGCATTCAT GCCGCTCGAG ATGGATCAGA GCATCATTGC GGCATTTCTC
ACCGTTGCCG GATACTCCAT TACCGATACC GTCGTGGTGT ACGACCGGAT AAGGGAGAGG
ATCCGCGGAC GGAAGCCGTC TGAATACGAA GCCATATTCA ATGACAGCAT GAACCAGACG
CTCAGCCGTA CCATCATTAC CTCAGGAACG ACACTCATCA CCGTGCTGAT TCTTTTCATT
TTCGCGGGTC CGGCAATCAG AGGATTTGCT TTTGCCGTTT TCACAGGAAT TCTTATCGGA
ACCTACTCGT CTATTTTTGT TGCCGCCCCT ATCGTTTATG ACTGGCTGAA GGCGACAAAG
TCCTCGGTAA GGCTCAGAGG GGGCAGTGTT TCGTAA
 
Protein sequence
MRIFHKTSFN FIKHRKIAYV ISMVLLLSGI VSLAFRGLNY GIDFRGGSEV VIRFEKNVEV 
GSVRAVLKEA GVSGTLKQYG IDRSFLLSTV FSGQTNELKA LVSNAFNARF PDNRHEIVRI
DSVGPSIASD LKWSALKALL GALAAILLYV GIRFELKFAA AGVVAIFHDV LTVLGLFSIL
GGLFAFMPLE MDQSIIAAFL TVAGYSITDT VVVYDRIRER IRGRKPSEYE AIFNDSMNQT
LSRTIITSGT TLITVLILFI FAGPAIRGFA FAVFTGILIG TYSSIFVAAP IVYDWLKATK
SSVRLRGGSV S