Gene Clim_0007 details

Gene Information

• Locus tag: Clim_0007
• ID: 6354921
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 8448
• End bp: 10313
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642667631
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_001942094
• Protein GI: 189345565
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATGATA TTATCGTAGC AGGTGGCGGC CATGCCGGCT GCGAGGCTGT TCTTGCATCT 
GCGAGAATGG GTCTGTCCTG TCTTCTTATC AGTTCGGATC TTACGGCTCT TGCAAGAATG 
TCATGCAATC CGGCCATCGG AGGAGTCGCA AAAGGTCAAA TAACAAGAGA AATCGACGCT 
CTGGGCGGAG AGATGGGTAA GGCAATAGAT GCTGAAGGTA TACAGTTCCG GATGCTGAAC 
AGAAGTAAGG GACCCGCCAT GCATTCTCCA AGAGCACAGG CCGACCGCTT GCTTTACTCT 
CAATATATGC GGCGCGTTAT AGAAAAAGAA ATAAACATCG ATCTTCTGCA GGATACCGTT 
ACGGGAATCA AAAACCGTTC CGGGACGGTT TCAGGCGTCT ATATCTCTAC AGGAACCTTT 
ATAGAGTCCC GAGCGGTAAT TCTCGCATGC GGGACCTTTC TGAATGGCCT TATTCATATA 
GGCCTCAGTC ATTATCAAGG CGGAAGAACT CTTGCCGAAC CGCCAGTTAC CGGCCTTACC 
GAAAACCTTT CATCGTTCGG ATTCAGAGCA GGGCGCCTTA AAACCGGAAC TCCGCCGCGT 
ATCGATAAGA GAAGCGTTGA TTATTCTAAG CTTGAAGAGC AGATGGGAGA CTCTCTGCCC 
GTCCCATTTT CTTTTTCGAC CCATACCCTT GCAAACCGTT CACAACTCAG CTGCTATCTT 
ACAAAAACGA CTGCCGAAAC ACATGAGATT CTGAGGTCCG GCTTTGACCG TTCTCCTCTC 
TTTTCAGGCA AGGTGAAGGG AACAGGCCCT CGTTACTGTC CGTCCATTGA AGACAAAATC 
AACCGCTTTT CCAATAAAGA GAGCCATCAC ATCTTTCTTG AACCAGAGGG TTTCGATACC 
AATGAAATGT ATGTCAACGG TTTTTCGACA TCTCTTCCTG AAGACATTCA GCTTCTCGGA 
CTTAAATCAA TACCAGGTCT TGAAAAAGTC AAAATGATCC GACCGGGATA CGCCATTGAA 
TACGATTACT TTTTCCCTTA CCAGATCAGA AGCACGCTTG AGACGAAACG CATCGATAAT 
CTTTACTTTG CAGGCCAGAT AAATGGTTCT TCAGGATATG AAGAAGCAGC TGCGCAGGGT 
CTTATGGCAG GAATCAATGC ATCTCTGAAA CTCCTCGACA AGCCGCCGCT GATATTGAAA 
CGTTCTGATG CTTACATAGG AGTTCTTATT GATGATCTGA TTACCAAAGA AACAGATGAG 
CCCTATCGCA TGTTCACCTC TTCTGCAGAA CATCGTCTCC TTTTACGACA TGACAATGCA 
GACCTCCGCC TTTCTTCGTA CGGTTACAAT GCAGGATTGC TGGATGAAAA ATCAATGAGT 
GACTGTCACA TAAAATTTTC TGCGATAGAG AAGGTAAAAT TGCTGGCAAG TAATTTTAAA 
TTTCAACCTG TCTCAATCAA TCAGCACCTT TCCATTAACG GAATCGCTGA AATTCAGACT 
TCTCTTTCAG CTCTGAATCT GTTGAAACGT CCCGGCATCA CTTTCCGTAT GCTTCTTGAC 
GGTAACGAAT ATTTTCGAGA GTCGGTTTCC GAAATCACAA CAGATCCGCT TGTGTTTGAG 
CAGATTGAGA TAGATATCAA ATATGAAGGC TATCTTAAAA GAGATTTGCT GATGTCCGAG 
AGAATCATCC GTCTCGAATC GTTACAGATT CCTCATTCAT TTCAATACGA AATGCTATCC 
GGTTTATCCA ATGAAGGCAG AGAAAAGCTT ATCAGGTATC GTCCTGAAAC AATCGGTCAG 
GCGACAAGGA TACTTGGCGT GTCGCCATCC GACATTTCTG TTCTTATGAT CAAACTCGGG 
CGATAA 

 

Protein sequence

MYDIIVAGGG HAGCEAVLAS ARMGLSCLLI SSDLTALARM SCNPAIGGVA KGQITREIDA 
LGGEMGKAID AEGIQFRMLN RSKGPAMHSP RAQADRLLYS QYMRRVIEKE INIDLLQDTV 
TGIKNRSGTV SGVYISTGTF IESRAVILAC GTFLNGLIHI GLSHYQGGRT LAEPPVTGLT 
ENLSSFGFRA GRLKTGTPPR IDKRSVDYSK LEEQMGDSLP VPFSFSTHTL ANRSQLSCYL 
TKTTAETHEI LRSGFDRSPL FSGKVKGTGP RYCPSIEDKI NRFSNKESHH IFLEPEGFDT 
NEMYVNGFST SLPEDIQLLG LKSIPGLEKV KMIRPGYAIE YDYFFPYQIR STLETKRIDN 
LYFAGQINGS SGYEEAAAQG LMAGINASLK LLDKPPLILK RSDAYIGVLI DDLITKETDE 
PYRMFTSSAE HRLLLRHDNA DLRLSSYGYN AGLLDEKSMS DCHIKFSAIE KVKLLASNFK 
FQPVSINQHL SINGIAEIQT SLSALNLLKR PGITFRMLLD GNEYFRESVS EITTDPLVFE 
QIEIDIKYEG YLKRDLLMSE RIIRLESLQI PHSFQYEMLS GLSNEGREKL IRYRPETIGQ 
ATRILGVSPS DISVLMIKLG R