| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0002 |
|---|
| Symbol | |
|---|
| ID | 6354916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | + |
|---|
| Start bp | 1930 |
|---|
| End bp | 3054 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642667626 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_001942089 |
|---|
| Protein GI | 189345560 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.22496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTT CTTCAACAAT ACGTCAACTA CAGGATGCTG TCACAAAAGT ATCCCAGGCC
ATTCCTGCAA AAACCATTGA TCCAAGGTAT GACAATGTTC ATTTAACCCT GGAAAACGGC
ATGTTAACGC TTTATGCTAC AGATGGTGAA ATCTCTATCA CAGCAAAGTG TGAGGTGGAA
ACTGCCGATT CAGGAAATAT CGGCATCAAA GCAAGGACAC TTCAGGATTT TCTGAGGAGC
ATGTATGACA CTCCGGTTAC ATTCAGTATT GAAAGGCAGG AAATCAGCGA TCATGGTACA
GTGTTTATAG CTACCGATAA GGGTCGTTAT AAAATTCCAT GTCTGTTCGA AAGTAAAGCT
GAAAAAACCG AAAAAACCTA TGACATTGTT CTCGATCTAA AAACTGCGGA ACTGCAGGAT
CTGATACAGA AAACTGTTTT TGCATGCAGT GTGGATGGTA TGAGACCTGC AATGATGGGA
GTTCTGTTTG AAATAGAAGA AAATCAGATT ACCTCCGTAG CTACAGATGG TCATCGTCTG
GTTCGCTGCC GTAAGCCGAT TACAATACAG GTTGAAGAAA AACAGAAAAT TGTTGTTCCA
TCCCGTGTGC TTTCGATCAT TCAGAAACTC GCTCAGCATG AAAACGTAAG CATGTCGATC
GATGAAGAGA GGAGAACTGT ATGTTATATT TGTAATAATG TCGTACTTGA AGCGGCACTT
ATTGTTGAGC CATATCCGAA CTATGAAGCA GTTATTCCTG TAGAACACGA TAAGAAAATA
GTCACTCAAA GAACGGATAT TTATGATTCG GTAAAAAGGG TAGGAAGATT TTCAAGTATC
GGCGATATAA AAATTGAAGT CAGCGGTGAG GTTTTGAAAA TAATGGCTGA AAACACCAAC
GAAGGGGAAT CCGCTCAGGA AGATTTGCCC TGCAGTTATT CAGGCGATCC TATCATTATC
GGTTTCAACG CAAAATTTAT TGAAGCTGCC CTTGCGCATC TTGATGAAAG CGAAATAACC
ATCGAACTGA AAAGTCCTAC AACGGCGGTC ATCTTCAAAC CTGGAATACA AAAAGAGAAT
GAAGAACTGA TTATACTTGT TATGCCGGTA CGCATTAATA ATTGA
|
|---|
| Protein sequence | MRFSSTIRQL QDAVTKVSQA IPAKTIDPRY DNVHLTLENG MLTLYATDGE ISITAKCEVE
TADSGNIGIK ARTLQDFLRS MYDTPVTFSI ERQEISDHGT VFIATDKGRY KIPCLFESKA
EKTEKTYDIV LDLKTAELQD LIQKTVFACS VDGMRPAMMG VLFEIEENQI TSVATDGHRL
VRCRKPITIQ VEEKQKIVVP SRVLSIIQKL AQHENVSMSI DEERRTVCYI CNNVVLEAAL
IVEPYPNYEA VIPVEHDKKI VTQRTDIYDS VKRVGRFSSI GDIKIEVSGE VLKIMAENTN
EGESAQEDLP CSYSGDPIII GFNAKFIEAA LAHLDESEIT IELKSPTTAV IFKPGIQKEN
EELIILVMPV RINN
|
|---|
| |