Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SYO3AOP1_1540 |
Symbol | |
ID | 6332018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
Kingdom | Bacteria |
Replicon accession | NC_010730 |
Strand | + |
Start bp | 1582775 |
End bp | 1584145 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 642657815 |
Product | outer membrane porin |
Protein accession | YP_001931692 |
Protein GI | 188997441 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000339272 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CACTTTTAGC AGCAGCATTG CTATCAGTTA CAGTAAGCCA ATCTATGGCA GCTAATGACC TTGAATCCGC ATTCAAAGAA TCAAAGGTCA TGGGGCAGCT TAGGGCTTTC TACATTGACA GAGATTATGA TGTTGTAAAC AGTAAAAATG ATAGGTCAGC TTTTGCAATT GGTGGAAAGT TTGGCTTTGA GACTGCAGCA GTAAATGGCT TAAAATTTGG AATCATGGCT TACACTACAA ACGGAATCAA CACAAATCGT GAAAGTTGGC GAAATAATCC ACCGTATAAC GGAAACCCTC ATATGGACCC ATCTTTATTT GGAAAAGATA GAAAAAGCGT AACTTATATC GGTCAGTTGT ATTTAGATTA CAAATATCAA AACACAGCTG TTAAGATAGG AAGACAAGAG ATTAACACTC CAATGGCTGG CATGGACGAT GCAAGAATGC TTCCAAACCT TTTTGAAGGT GCATTAATCA CAAATAAAGA TATTCCAAAA ACAACCATCA TAGCAGGACA CTTTTGGAAT ATGGCATATG GAACATTTGC AAACGCTTAT TCTGCTTGTT CTAATTTAGG TTTACAATCA GGTTATGGTT GCGGTGGATA TACTACTCCT AATCAGGGCT TAGCTAAATA TGACACAGGA AATTTCTTAA ACATGGGTAA ACAAGCTATT GGAAAAGCAA ACGCCGGTGT TTCTGTGATT GCTGCAATCT ATGAAGGGAT ACCAAACTTA AAGCTTCAAG CTTGGGACTA CTACGCATGG GATATGCTTA ACATTTTATA CTTACAAGGT GATTATACGT TAAAACTATC TGATGTAAAA ACTACATTGT CAGCTCAGTA TATCAACGAA ACAAACGTTG GAAACAACAT TAAAAATATA TTTGGAAAAG AAGTTGGGGC GAATTTATTT GGTGCTAAGG TAAACTTTAA TGTTCCAGTA CCTGTAGTTG AAAACTTTAA TCTTTATGCG GCATACTCTC AAACCGGAAA AGATGAAGGA AAACTTTTAA ACGGTGGATT AATCACTCCA TGGGGCGGAA CACCGGGATT TGTACAAGGT ACTGTTACAA GACTTGGTTA TGTAGCCGAT ACATCTGCAT GGAAAGTTGG AACATCTTTT GACATAATCA AAGGATTAAA CTTACATCTT GCATACTCGT ATTTCAATGT AGGAAGTAAA GCTCAGTATT ACAATAGAAC CCACGATGCT TCAGAAACAA ACTGGGACTT AACATGGAAA TGTAGATTAA TTAAAAACCT TGAATTAAAG GCAAGAGGAA TTTACACATG GAACTTTGTA CCGGGTCAAA ACTTTACAGA ATACAGACTT ATCGCAAATT ATAATTTCTA A
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Protein sequence | MKKTLLAAAL LSVTVSQSMA ANDLESAFKE SKVMGQLRAF YIDRDYDVVN SKNDRSAFAI GGKFGFETAA VNGLKFGIMA YTTNGINTNR ESWRNNPPYN GNPHMDPSLF GKDRKSVTYI GQLYLDYKYQ NTAVKIGRQE INTPMAGMDD ARMLPNLFEG ALITNKDIPK TTIIAGHFWN MAYGTFANAY SACSNLGLQS GYGCGGYTTP NQGLAKYDTG NFLNMGKQAI GKANAGVSVI AAIYEGIPNL KLQAWDYYAW DMLNILYLQG DYTLKLSDVK TTLSAQYINE TNVGNNIKNI FGKEVGANLF GAKVNFNVPV PVVENFNLYA AYSQTGKDEG KLLNGGLITP WGGTPGFVQG TVTRLGYVAD TSAWKVGTSF DIIKGLNLHL AYSYFNVGSK AQYYNRTHDA SETNWDLTWK CRLIKNLELK ARGIYTWNFV PGQNFTEYRL IANYNF
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