| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1313 |
|---|
| Symbol | |
|---|
| ID | 6331871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 1349916 |
|---|
| End bp | 1351325 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 642657597 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_001931477 |
|---|
| Protein GI | 188997226 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.130987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAG TTAAACAGGT TGAAAAAATA CTGGTACCGG ATAGGGTTAA AAGAGCATTA
AAAGAAGCAA TTGGAGAGCA TAATGTATTA GATGATGAAA TGGATAGAAT GTTATATTCA
TATGATGCAA CGAGATTAAG CTTTCCGCCG GATGTGGTTG TAATACCAGA AAGTGAAGAA
GATGTTAAAA AAGTAGTAAA AATTTGTTAT GAAGAAGGTA TACCAATAAC TCCAAGAGGA
GCAGGTTCGG GCTATACCGG TGGTGCTATT CCGGTAAAAG GTGGAGTATT AATCTCTTTT
GAAAAGATGG ATAAAATTTT ATGGATTGAC GAGGACAACG CAGTTGCAAA AGTTCAACCG
GGTGTAATTA CTTATAGACT TCAGCAGGCA GTAGAGAAAA GAGGATTATT CTATCCACCA
GATCCGGCAA GTTATAAATT CTGCACGATG GGTGGAAATG TAGCTGAAAA TGCAGGTGGT
CCAAGATGTG TTAAGTACGG CGTAACAAGA GAGTATATCA TGGAGCTTGA CACTGTAATT
TATACAGGAG AAACAATCCA TACAGGAAGA ATAACATTAA AAGATGTTGC TGGATATGAT
TTAACAAGAC TTTTAATCGG CAGTGAGGGA ACGCTTGGAA TATTTACAGG AATAACAGTC
AAATTAATTC CAAAACCAAA AGCTAAGAAA ACAGTAAAAG CTGTATATAT GGACTTAGAA
TCTGTAGGAA AAACAGTTAA AGATATATTT AAAGCCGGAA TTTCACCGTC AGCTCTTGAA
TTTATGGATA ATCTTGCAAT AAATGCAGTA GAAGATTTCG GGCATTTTGG ATTAGATAGA
GACGCAGAAG TTATACTTTT AATAGAAGTT GACGGTCATC CAAAAGCTCT TGAAGATGAG
ATTGTAGAAG TTGCTAAGAT ATGTGAAATG AACGGTGCAA AAGTTGAAGT TGCTAAAACA
GACAGAGAAG CAGAGAAACT TTGGGAAGCT CGTAGGTCTT TATCTCCAGC AGTTGCAAAA
CTTGGAAGAA CAAAAATAAA CGAAGATATA GTATTTCCAA GAAGCTATTT ACCAGAGGCA
CTTCCAAAGC TTAGAGAGAT TGGAAGAAAA TATAACTTAA AAATGGTGAA CTTTGGACAT
ATTGGAGATG GAAACGTTCA TGCTAACTTT ATGATAAATG GATTAGACCC GGATGAAGTA
GCAAGAGCAG AAAAAGCTGT TGAAGAAGTT TTTGACTTAG CATTATCTTA CAGAGGTTCT
ATCACTGGTG AACATGGGGT TGGTATAACA AAGGCAGAAT TTATGAGAAA ACAATTTTCT
CCACAAGAAA TGGAATTGAT GAAGAAAATC AAAAGAGCAT GGGACCCGGA AAACTTAATA
AATCCTGGAA AGATGGGATT AGACGATTAA
|
|---|
| Protein sequence | MFKVKQVEKI LVPDRVKRAL KEAIGEHNVL DDEMDRMLYS YDATRLSFPP DVVVIPESEE
DVKKVVKICY EEGIPITPRG AGSGYTGGAI PVKGGVLISF EKMDKILWID EDNAVAKVQP
GVITYRLQQA VEKRGLFYPP DPASYKFCTM GGNVAENAGG PRCVKYGVTR EYIMELDTVI
YTGETIHTGR ITLKDVAGYD LTRLLIGSEG TLGIFTGITV KLIPKPKAKK TVKAVYMDLE
SVGKTVKDIF KAGISPSALE FMDNLAINAV EDFGHFGLDR DAEVILLIEV DGHPKALEDE
IVEVAKICEM NGAKVEVAKT DREAEKLWEA RRSLSPAVAK LGRTKINEDI VFPRSYLPEA
LPKLREIGRK YNLKMVNFGH IGDGNVHANF MINGLDPDEV ARAEKAVEEV FDLALSYRGS
ITGEHGVGIT KAEFMRKQFS PQEMELMKKI KRAWDPENLI NPGKMGLDD
|
|---|
| |