| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1160 |
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| Symbol | |
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| ID | 6331817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1207285 |
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| End bp | 1208781 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 642657442 |
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| Product | protease Do |
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| Protein accession | YP_001931326 |
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| Protein GI | 188997075 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000000336016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATAA AAGCGGAGGT TATAAAAATT ATGAAAAAGG TAGTTTTACC AATTGCTTTA
ATTTTAGCAG TTGCATATGT TGTTTTTGCT CAGCTTGGAA AACAGCAAGA AAGTTATAAT
CAAAGTATAA AAGGTCAAAC TTTATCACTT CCAAATCTCG AAGCTATAGA AAATGAAAGG
ATAAAGCTTA TTGAAATGGT TTCTCCAGGT GTTGCAACCG TATTTACCAC TCAAGAAGTT
AAAATTCCTA ATCCTTTTAG TGATATTCCT TTTGGTGATT TTTTTGGCAT TCCAAACACA
CCAGAATTTA AACAAAAAAG ACAAGGTCTT GGTTCTGCTT TTATTGTAGA TGTAGATTAT
AATAAAAAAG TTGTGTTTCT TCTAACAAAC AATCACGTAA TAGAAAATGC AAAAGATATT
CAAGTTGCTT TTAAAAACAA AGTTGTACTA AAAGGAAGAG TTGTTGGTGG CGATAAATTA
AGCGATGTTG CATTAATAGA AGTTCCATTT AAAAAAGGAA TAGAAGATTT TGCATCTAAG
CATGTTTTAA AACTTGGAGA TTCTGACCAG CTAAAAGTAG GTGCAACAGT TATTGCAATC
GGAAGCCCCC TTGGACTTTC AGATACAGTT ACAATAGGAA TTGTATCAGC CAAAAACAGA
CAGATAGAAG ATAGACCGGG AGAAGGATTT ATTCAAACAG ACGCAGCAAT TAATCCAGGA
AACTCCGGCG GCCCACTGAT CAACATCAAA GGTGAAGTTG TAGGAATCAA TACTGCTATA
ATTGCCGGAG CACAAGGTCT TGGTTTTGCA ATTCCAATAA ATCAAGCAAA ATGGGTTATG
GATCAAATAT TAAAATATGG AAAAGTAAAA AGAAGTAAAA TTGGTGTAAT CGTTCAACCT
TTAACTCCGG AGCTTGCAGA ACACTTTGGA GTAAACGAAG GAGTACTTGT TTCTAATGTG
CAACCAGGAG GACCGGCAGA CAAAGCTGGT ATTAGAGCAG GAGATATTAT AGTAGAAGTA
AATGGCAAAA AAATTTCTGA AGTTCAAGAT TTACAAAATC AGATAATGAA AAACCCGCCG
GGAACAAAAA TTAATCTAAA AGTTATAAGA AATGGTAAAG AGCTGACATT TACAGTAATT
ACCGTTCCAT TAGAAGGTAG TGATACACAA GAGCAAACTA CTGATGAAAG TTTGTCTTCA
ATAGAAAACA GCATAGGATT AATAGTAAAA GATTTAACAC CAGGATTGAT ACAAAAATAT
GGATTGCCTA AGGTGTCTAA TGGAGTTTTG GTATATGGCG TTAAAGAAGG CAGTGCTGCA
GAAGATGCAG GTTTACAAGC TGGAGATATT ATCCTTTCTG TGAATAATAT TCCTGTAAAA
TCTGCTTCCG AATTTTGGTC TATAATATCA AAAGCTAAAA AAGAAGGAAA AGATAATGTT
CTTCTTTATT TACAAAAAGG AGATAATAGA ATATATCTAA CATTACCTTT AAGATGA
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| Protein sequence | MNIKAEVIKI MKKVVLPIAL ILAVAYVVFA QLGKQQESYN QSIKGQTLSL PNLEAIENER
IKLIEMVSPG VATVFTTQEV KIPNPFSDIP FGDFFGIPNT PEFKQKRQGL GSAFIVDVDY
NKKVVFLLTN NHVIENAKDI QVAFKNKVVL KGRVVGGDKL SDVALIEVPF KKGIEDFASK
HVLKLGDSDQ LKVGATVIAI GSPLGLSDTV TIGIVSAKNR QIEDRPGEGF IQTDAAINPG
NSGGPLINIK GEVVGINTAI IAGAQGLGFA IPINQAKWVM DQILKYGKVK RSKIGVIVQP
LTPELAEHFG VNEGVLVSNV QPGGPADKAG IRAGDIIVEV NGKKISEVQD LQNQIMKNPP
GTKINLKVIR NGKELTFTVI TVPLEGSDTQ EQTTDESLSS IENSIGLIVK DLTPGLIQKY
GLPKVSNGVL VYGVKEGSAA EDAGLQAGDI ILSVNNIPVK SASEFWSIIS KAKKEGKDNV
LLYLQKGDNR IYLTLPLR
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