Gene SYO3AOP1_1148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSYO3AOP1_1148 
Symbol 
ID6331811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSulfurihydrogenibium sp. YO3AOP1 
KingdomBacteria 
Replicon accessionNC_010730 
Strand
Start bp1196280 
End bp1197146 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content36% 
IMG OID642657430 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_001931314 
Protein GI188997063 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones95 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAATA TAATAGTTGC ACAAACAGCA GGATTTTGTT TTGGTGTAAG AATAGCTGTA 
GATATGGCAA AGCAAGCCGG AGAAAAACTC GGACATGCAT ATACAAATGG TCCAATAATC
CATAACAAGC AAGTTGTTAA TTATCTCAAA TCTATTGGTG TTGAAGAGAT GCAGGACTAT
TCACAACTAA AACCCGGCGA TACTGTAATT ATAAGGTCAC ATGGTGTACC ACCCAAAACA
GAAAGAATGT TAAAAGAGTT GAATATAAAC GTTCTTGATG CTACATGTCC GTTTGTAAAA
AAAGTTCATG ATAAAGTCAA GCAACTTGTT GAAGAAGGGT ACTTTGTAGT AATAATAGGT
GAAGAAGGGC ATCCGGAAGT GATAGGAACG CTTGGACACC TTGAAGAAGT TGGCGGAAAA
GGCGTTGTTG TTGAAAATTT TGAAGATTTA GTCAAAAAAG TTCCAAAAAG AAATAGAATC
GGAGTAGTAG CACAAACAAC CCAAAGTGAA GACTTCTTCA GAGAAGCGGT AGGATATTTG
GCAGAAAATA CAGAAGAGTT AAAAGTTTTT AATACAATTT GCGATGCTAC TTCTGTAAGA
CAAGAAGAGG TTAAAAAAAT AGCACCAGAA GTTGATGTGA TGATAATCAT CGGTGGAAAA
CACAGCGGAA ACACACAAAG ACTTTATCAG ATTTCAAAAG CATTAAATCC AAATACTTAT
CATATAGAAA CAGCAGACGA GCTACAAAAT CAGTGGTTTG AAAATAAAGA AAATATAGGT
ATATCAGCCG GTGCATCCAC ACCTGACTGG ATAATTCAAG AAGTTGTAAA TAAAATCAAA
GAAATAAAAG GAGTTAGCCA TGAATGA
 
Protein sequence
MANIIVAQTA GFCFGVRIAV DMAKQAGEKL GHAYTNGPII HNKQVVNYLK SIGVEEMQDY 
SQLKPGDTVI IRSHGVPPKT ERMLKELNIN VLDATCPFVK KVHDKVKQLV EEGYFVVIIG
EEGHPEVIGT LGHLEEVGGK GVVVENFEDL VKKVPKRNRI GVVAQTTQSE DFFREAVGYL
AENTEELKVF NTICDATSVR QEEVKKIAPE VDVMIIIGGK HSGNTQRLYQ ISKALNPNTY
HIETADELQN QWFENKENIG ISAGASTPDW IIQEVVNKIK EIKGVSHE