| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1117 |
|---|
| Symbol | |
|---|
| ID | 6332486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 1161625 |
|---|
| End bp | 1166031 |
|---|
| Gene Length | 4407 bp |
|---|
| Protein Length | 1468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 642657401 |
|---|
| Product | Glutamate synthase (ferredoxin) |
|---|
| Protein accession | YP_001931286 |
|---|
| Protein GI | 188997035 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTGAAA TTTTAGAAAA AGACGCTTGC GGAGTTGGAT TTATCGCAAA TATCAAAGGT
ATAAAATCTC ATAAAATTCT TCATAATGCT CTTGAATCTC TTGCGAATTT AGACCATAGA
GGTGCTGTAA GTGCCGATGG TAAAACAGGA GACGGAGCAG GAATTTTAAC ACAGATTCCA
TATAAGTTTT TTGAAAAACA ATTATTAAAA TTAAATATAA AAGCTCCATC GGTTGAAGAT
TTGGCAGTTG GTATGTTTTT CTTGCCAAAG GGTAAAGAAG AATCTATAAA GAAAGAAATT
GAGGATATAA TAAATCAAAG ATTTAAGTTT TTGACTTGGA GAGAAGTTCC AATAAACGAA
GCTGAAATCG GAGAGATTGC AAAGAGAACG CAGCCAACAA TCTATCAAGC TTTTATATCA
AAAGAAGGTA TAAAAGTTGA TAATTTTGAA AGGGAATTAT TTATTTTAAG AAAAAAACTT
GAAAAGCTTG CTGATAATCC CGATTACAAA GATTTTTATA TTCCTTCTCT ATCTTCAAGA
ACAATAGTTT ATAAAGGACT TATCACAGCT CCAAAATTGA GAGATTTTTA CTATGATTTA
CAAGATGAAG ATTACGAAAC AGCTTTTGCA ATATTCCATC AAAGATATTC AACTAACACA
TTTCCTAACT GGAAGCTTGC TCATCCTTTC AGAATACTTG CCCATAATGG GGAAATAAAC
ACTATTTCAG CAAACAGAAA CTGGCTAAAA GCTAAATATC AAGACATTAG AGAAGTATGG
GGAGACCTTG CCGAGTATAT TTTGCCAATT ACAAACGATA CTGACAGCGA CTCTGCATCT
CTTGACAATG CAGTAGAATT TTTAGTCCAT TCTGGAAAAG ACATTTTGAC TGCAATTAAT
GTATTAGTTC CAAGAGCATG GGAAAACGAT ACAAGATTAA CACCGGAAGA AAGAGCATTC
TATGAATATT TTGCATGTAT TTTTGAAAGC TGGGATGGTC CTGCAGCTAT AGCATTTACA
GATGGAAAAA TCATAGGTGG AAAGTTAGAC AGAAACGGTC TAAGACCGGC AAGGTACATA
ATTACAGAAG ACACTATACT TATGGCTTCT GAAGTTGGAG TTATAGAATT TCCGGAAGAA
GAAGTAAAAT TAAAAGGAAG ATTAGGTCCG GGAGATAAAA TAGCTCTTGA TTTAGAATCA
GGAAAGATCT ATTTCTCAGA AGAGATTATA GACCTACTTG TAAAAAATAA AAAATACAAA
GAATGGGTGG AAGAAAATAT TACTCCGTTT ATACCGGCTA AGGATGGTCC GGAAGTAGAA
AGAAAAGATG TATTAAAAGA GTTAATTACT TTTGGATATG ATAAAGATGA GATAAACATG
GTTGTTAAAG AAATGGCTCT TAAAGGAACA GAGCCTATCT ACTCAATGGG TAATGACACG
CCTATATCTG TTTTATCAAG AAGACCTAAA ATGCTTGCCT CTTACTTTAA ACAAAGATTT
GCACAGGTTA CAAACCCACC GATAGACCCA ATCAGAGAAA AAGCCGTTAT GTCTTTAAAG
ACATACGTAG GAAAAAAAGA AAACTTTTTA CTTGAGACAC CACAGCATGC AAAACAGATT
GTTTTTGATT CACCAATTAT TTTTGACAAC GAAATGCAAG AGCTTATACA GACATATCCA
GAAAAAATCC AAATAATTCC AACTATATTC CCACCTTACG ATACTGCGTT AGAACCAGCT
TTAGATGAGA TTTGCCAAAG AGTTGAAGAA GCGGTAGATA ATGGAAAGGA AATTATAATC
TTATCAGATA GAGATGTATC TATTGAAGGT GCTCCAATTC CTATGGGTCT TGCTGTTGGA
GCTGTTAATG CTTATATGTC AAGAAAAGGT AAAAGAAGTA AATTTAGCAT AATAGCAGAT
TCAGGAGAGG TTAGAGATAC TCACAGCATA GCTTTCTTAA TAGGATATGG TGCTACTCTT
GTAAATCCAT ACATGGCTGT ACAGGTAATA AGAAATCTTG TTGAAGAAGA TAGTAAGCTT
GAAATATCTT TTGAAGAAGC GGTAAAGAAT TATAAAAAAG CTGTTAATGA AGGTCTTTTA
AAGATAATGT CTAAAATGGG AATTGCTACA ATAAAAAGTT ATAGGTCTGC TGGTTTATTT
GAAGCTCTTG GTATTTCTCA GGAAGTCATA GATAAATGTT TTCCGGGAAC AATTTCTAAG
CTTGATGGAA TAGGATTTGT AGAGATAGCA AGGGAAACCT TAGCAAGATT TAATAAAGCA
TTCTCAGGAG AGCTTACAGA ACTTCCAGTA GGTGGAGAAT ACAGACATAG AAGAGAAGGT
GGAGAGTTCC ACTCTTGGAA TCCAAAAGCT TTAACTTCTC TACATAGGGC AGTAAGACAG
ATTAAGCTTG ATGAATATAA AGCATTTACA GAATATGCTT ATGCAGAAAA ACCGGTAGAG
CTAAGAGATT TACTTGAAAT AACATCAGAT AGACCACCAA TTCCGATAGA AGAAGTAGAA
CCAATAGAAA GTATAATGAA AAGATTTATC GGTGCTGGAA TGTCTGTCGG AGCTTTAAGT
AGAGAAGCTC ACGAAACCAT AGCAGAAGCT TTAAACTCTA TTGGTGGTAA ATCAAACTCC
GGTGAAGGTG GTGAAGACCC AGCAAGGTAT GGAACTATAA AAAATAGTAA AATCAAACAG
GTTGCATCAG GAAGGTTTGG AGTAACACCA GAATATTTAA ATTCAGCTGA AGAGATAGAA
ATAAAAATAG CCCAAGGTGC AAAACCGGGA GAAGGCGGAC AGCTACCGGG TAAAAAGGTT
GATGTATACA TTGCATTTTT AAGACATGCA AGACCCGGAA CAACTCTAAT ATCTCCACCA
CCACATCATG ATATTTACTC AATAGAAGAT TTAGCACAGC TAATTTATGA CTTAAAAATG
ATAAATCCAA GAGCTAAGAT AATCGTAAAA CTGGTATCAG AAAGTGGAAT TGGTGTTGTA
GGTTCCGGAG TAGCAAAAGC ATTTGCTGAT ATTATCCATA TCTCCGGACA TGATGGTGGA
ACTGGAGCAT CTCCGTTAGT ATCCATAAAG CATGCTGGAA CAATTTGGGA ACTCGGACTT
CCGGAAGTCC ATAGAGCCTT AATAGATAAT GATTTAAGAG GAAGGGTCAA GTTAAGAGTA
GACGGTGGAA TCAAAACAGG TAGAGATATT ATCATAGGAG CATTACTTGG AGCGGAAGAA
TTTGGATTTG GAACCGCTTT AATGATAGCT GAAGGATGCG TAATGGCAAG ACAATGTCAT
TTAAATACAT GTCCTGTTGG AATAACAACG CAGGATAAAA GACTTAGAGA AAAATTCCCA
GGAAAGCCAG AGCATATTAT CAACTACTTA AAATTTGTTG CACAAGAAGT TAGACAGTAT
CTTGCAGATA TGGGATATAA AAGCTTAGAC GAAATCATCG GAAGAGTAGA CCTGTTAAAA
CCAGCTATAC CAACAGACCA TTATAAAGCT AAAAAATTGA AATTAGATTA TGTATTACAA
AAACCAGACT TTTCCAAACC AATCAAGTGT ATTCAAGACT CTAATCCAAT ACCACAGTCA
AAACAACCAT TTGACTTAGA AGTATTGAAA GATATACTTC CTGCGATTGA AAAAGATGAA
AACTTCTCAG GTTTTTATGT TTTGAGAAAT ACTTACAGGT CATTTGGAAC AAGAATAGCC
CATGAAATCG TAAAGAGATA CGGAGATAGA GGATTAAGAA CAGGTAAATT AGAGCTTAAT
TTAAGAGGAA CTGCAGGGCA AAGCTTTGGT GCATTCTGCG TTCCAGGAAT GATTTTGTTT
TTAACAGGAC AGGCAAACGA TTATGTAGGT AAAGGAATGG CCGGTGGAGT AATCATAATC
AAGCCACCAA AAGAATTCAA AGGCGAAAGT CATAAAAATG TAATTGCCGG CAACACAATA
CTTTATGGAG CTACAGGCGG TCAAGTTTAT ATCTCCGGAA TGGTCGGAGA AAGATTTGCA
GTAAGAAACA GCGGAGCTAC GGCAGTAGTT GAAGGTGTTG GAGACCATGG CTGCGAATAC
ATGACAGAAG GAACAGTTTT AATACTTGGG AAAATAGGCA TAAACTTTGG AGCTGGTATG
ACCGGCGGAA CAGCTTACAT CTACGATCCA GAAGGTGAAG TAGATAGAAA AATCAATAAA
TCATATGTAA AAACTGAAGC ACTCGAAGAG GAAGACATAG AAGAGATAAA CAAACTCCTA
TTAAAACATG TTGCCTATAC AGAAAGCAAA ATAGCTAAAT ATATATTAGA CAATTTTAAA
GAAGAAATTA ATAACTTTGT TAAAGTTGTA GCGTTAGAAT CTAAAAAACC TGCATTAGAC
ACAGATGAAG CAGTTGTAGG AAAGTGA
|
|---|
| Protein sequence | MSEILEKDAC GVGFIANIKG IKSHKILHNA LESLANLDHR GAVSADGKTG DGAGILTQIP
YKFFEKQLLK LNIKAPSVED LAVGMFFLPK GKEESIKKEI EDIINQRFKF LTWREVPINE
AEIGEIAKRT QPTIYQAFIS KEGIKVDNFE RELFILRKKL EKLADNPDYK DFYIPSLSSR
TIVYKGLITA PKLRDFYYDL QDEDYETAFA IFHQRYSTNT FPNWKLAHPF RILAHNGEIN
TISANRNWLK AKYQDIREVW GDLAEYILPI TNDTDSDSAS LDNAVEFLVH SGKDILTAIN
VLVPRAWEND TRLTPEERAF YEYFACIFES WDGPAAIAFT DGKIIGGKLD RNGLRPARYI
ITEDTILMAS EVGVIEFPEE EVKLKGRLGP GDKIALDLES GKIYFSEEII DLLVKNKKYK
EWVEENITPF IPAKDGPEVE RKDVLKELIT FGYDKDEINM VVKEMALKGT EPIYSMGNDT
PISVLSRRPK MLASYFKQRF AQVTNPPIDP IREKAVMSLK TYVGKKENFL LETPQHAKQI
VFDSPIIFDN EMQELIQTYP EKIQIIPTIF PPYDTALEPA LDEICQRVEE AVDNGKEIII
LSDRDVSIEG APIPMGLAVG AVNAYMSRKG KRSKFSIIAD SGEVRDTHSI AFLIGYGATL
VNPYMAVQVI RNLVEEDSKL EISFEEAVKN YKKAVNEGLL KIMSKMGIAT IKSYRSAGLF
EALGISQEVI DKCFPGTISK LDGIGFVEIA RETLARFNKA FSGELTELPV GGEYRHRREG
GEFHSWNPKA LTSLHRAVRQ IKLDEYKAFT EYAYAEKPVE LRDLLEITSD RPPIPIEEVE
PIESIMKRFI GAGMSVGALS REAHETIAEA LNSIGGKSNS GEGGEDPARY GTIKNSKIKQ
VASGRFGVTP EYLNSAEEIE IKIAQGAKPG EGGQLPGKKV DVYIAFLRHA RPGTTLISPP
PHHDIYSIED LAQLIYDLKM INPRAKIIVK LVSESGIGVV GSGVAKAFAD IIHISGHDGG
TGASPLVSIK HAGTIWELGL PEVHRALIDN DLRGRVKLRV DGGIKTGRDI IIGALLGAEE
FGFGTALMIA EGCVMARQCH LNTCPVGITT QDKRLREKFP GKPEHIINYL KFVAQEVRQY
LADMGYKSLD EIIGRVDLLK PAIPTDHYKA KKLKLDYVLQ KPDFSKPIKC IQDSNPIPQS
KQPFDLEVLK DILPAIEKDE NFSGFYVLRN TYRSFGTRIA HEIVKRYGDR GLRTGKLELN
LRGTAGQSFG AFCVPGMILF LTGQANDYVG KGMAGGVIII KPPKEFKGES HKNVIAGNTI
LYGATGGQVY ISGMVGERFA VRNSGATAVV EGVGDHGCEY MTEGTVLILG KIGINFGAGM
TGGTAYIYDP EGEVDRKINK SYVKTEALEE EDIEEINKLL LKHVAYTESK IAKYILDNFK
EEINNFVKVV ALESKKPALD TDEAVVGK
|
|---|
| |